PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG377900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SRS

Protein Properties

Length: 332aa MW: 33754.3 Da PI: 8.9411

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG377900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.5	6.2e-67	101	253	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstk 90 +g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqq++ a a+a+a a a + r+ +++ + + ++++ + Pavir.2KG377900.1.p 101 AGGVSCQDCGNQAKKDCEHQRCRTCCKSRGFNCSTHVKSTWVPAAKRRERQQQQQLAVLAASAAAttAGAGPSRDPTKRPRPRLSVATPT 190 6889*********************************************877766554444444125555555555678889999999 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +ss+++++ + ++++P+evss+avfrcvr++ +d+ e+e+aYqt+vsigGhvfkGiL+d G++ Pavir.2KG377900.1.p 191 TSSGDQQMVTVAERFPREVSSPAVFRCVRLGPLDQVEAEVAYQTTVSIGGHVFKGILHDVGTH 253 *************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-62	103	253	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.7E-27	105	147	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-22	204	251	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAGFPLGGGG HNSHSRDAPA PSVPPVHPSE AAAAASFLYA ARAGAGLQLW QQHEQQQQQH 60 PFYASNIIRF SDDPSGAAPS LTGAASSSSS RGTRGGGASA AGGVSCQDCG NQAKKDCEHQ 120 RCRTCCKSRG FNCSTHVKST WVPAAKRRER QQQQQLAVLA ASAAATTAGA GPSRDPTKRP 180 RPRLSVATPT TSSGDQQMVT VAERFPREVS SPAVFRCVRL GPLDQVEAEV AYQTTVSIGG 240 HVFKGILHDV GTHSLGTPGG SGGAIEYHFR HAGDGSPPST AGAGDVGGGG GGGGAANVIV 300 SSAVVMDPYP TPGPYGAFPA GAAFFHGHPR Q*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	181	KRPRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.8001	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG377900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803795.1	1e-147	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A2T7EV23	1e-153	A0A2T7EV23_9POAL; Uncharacterized protein
STRING	Pavir.Bb02644.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	6e-35	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Pavir.2KG377900.1.p