PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG386700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 209aa    MW: 21923.5 Da    PI: 7.4154
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG386700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79.1e-12128190363
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek..vkeLeaeNkaLkkeleelkkevaklksev 63 
                          +++r +r++kNRe+A rsR+RK+a++ eLe++  v eLe+e + L++e+e+l+ ++++l+++v
  Pavir.2KG386700.1.p 128 SDRRKKRMIKNRESAARSRARKQAYVRELEQEayVRELEQEVQLLQQENESLRVKYEQLRASV 190
                          689**************************99855789********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-12126192IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.301128187IPR004827Basic-leucine zipper domain
PfamPF001701.3E-8129160IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-11130189No hitNo description
SuperFamilySSF579591.34E-7130187No hitNo description
CDDcd147072.92E-17130189No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAAAMDLEDD EDIWGNAASS PSATPPQPLA AAAASPCGAF ISTQLSLSSR LHLLSTAGGS  60
SAGIYAADGG RRHMDLGAGF RNAAASPAPF FSAYNPDAGA ARSALEDEMC LGPGAAAAAW  120
AGAGAGGSDR RKKRMIKNRE SAARSRARKQ AYVRELEQEA YVRELEQEVQ LLQQENESLR  180
VKYEQLRASV EVAGPVKKTL QRMPSAPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG386700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0937893e-39EF093789.1 Zea mays delayed flowering1 (DLF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803630.11e-100ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2S3H1W22e-98A0A2S3H1W2_9POAL; Uncharacterized protein
STRINGPavir.J04490.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97643044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.24e-15basic region/leucine zipper motif 27