PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG399800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 107aa    MW: 11837.3 Da    PI: 8.234
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG399800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.61.3e-1064104141
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41 
                          +f+ +Y+ ++GF+vrks++++s+ +g +t+++fvCs++g+r
  Pavir.2KG399800.1.p  64 EFWVTYGGRMGFDVRKSYTNTSNLDGLVTSSRFVCSNQGSR 104
                          69*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-664104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MMPSSCSRKR NHPHTPVQSL ASEAGRSMDD AQQLLEELPT RVAATSFWIP RLGMTFSSLD  60
EAWEFWVTYG GRMGFDVRKS YTNTSNLDGL VTSSRFVCSN QGSRAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG399800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.18e-26protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7DZB76e-39A0A2T7DZB7_9POAL; Uncharacterized protein
STRINGSb07g023760.12e-23(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-10FAR1-related sequence 12