PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG400500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 439aa    MW: 45812 Da    PI: 6.356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG400500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09266314355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.2KG400500.1.p 266 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 314
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.08E-11261318No hitNo description
SuperFamilySSF474596.41E-17261331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7266314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDMNESGEKG MEGNASSAGA GIPVEWQTQF SAAAFACPPA QQQQGHMMDS SFASGGLWAS  60
TSQTMALSDV GGAMSAARGG GGGGFLAPVP GFLPQGLGHF PVDSGFIERA ARASCFGGGA  120
GGVMGAGAGF GAADHQNMNS AFSGSSEALL DHQRKDGNEK GEPELGRNGH DAVPSSEAAG  180
GDCSSKGTSD SKKRRRPNEV MGGDQVQSSN LPADSANESV HSKDKGEESS PATTTGKSKG  240
KGAKETSESQ KEDYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA  300
VMLDEIINYV QSLQRQVEFL SMKLATVNPR LDLNIEGLLS KDLLRFPGVP SSSLGFSPEM  360
MHPQLQLSQP GLIQGGAAGM TNPDVFRRII QAQLSAKDGS QMPHALNGSF SDVAQMGYPS  420
PLGPQDLSIR PSQDGFQM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.191531e-142root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG400500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800986.10.0transcription factor bHLH49-like isoform X2
TrEMBLA0A2S3H0H10.0A0A2S3H0H1_9POAL; Uncharacterized protein
STRINGPavir.Bb02517.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-54bHLH family protein