PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG401900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 438aa    MW: 46852.3 Da    PI: 7.3089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG401900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.9e-18169218255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.2KG401900.2.p 169 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 218
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-24164238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19165235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-15169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-17169222No hitNo description
SMARTSM003531.9E-13173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT AAAASKDAPL QLHDSMPHPP SQGGNFFLKT HNFLQPLEKP  60
GAPPLLPAAA SGAESRHRHP QVPAAAATSK QHALPLPGGV GTFSICPAPV SVAPPATAAV  120
VKAEPPLVLW GQPAAALHQP AARELTVRVD RKGGSCSDGG TDQRPNTPRS KHSATEQRRR  180
SKINDRFQIL RELLPHNDQK RDKATFLLEV IEYIRFLQEK VQKYEATFPE WNQENAKMLP  240
WSKGQIPGDS LPDPSHFMRN GSSPGSNFTG KLDDNHNMVT SAASGAQNQT ENDHMASVCY  300
RSAETPAIIT NNALSQSQPQ WTDLSPVDDC AVNSQMLNNQ QLAIDEGTIS VSSQYSQELL  360
NSLTHALQSS GVDLSQASIS VQINLGKRAV KRPAAGLPSK EPTDPASSDE IGQQLAMLGG  420
GAEDLSHAAK RHKPGNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101121e-165leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG401900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676940.0BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801930.10.0transcription factor BIM2-like isoform X10
TrEMBLA0A1B6QD590.0A0A1B6QD59_SORBI; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
STRINGSi029604m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-61BES1-interacting Myc-like protein 2