PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG410100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 567aa    MW: 60505.1 Da    PI: 6.7347
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG410100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.6e-33373431159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Pavir.2KG410100.1.p 373 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 431
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-37358433IPR003657WRKY domain
SuperFamilySSF1182905.49E-29365433IPR003657WRKY domain
PROSITE profilePS5081137.539368433IPR003657WRKY domain
SMARTSM007744.0E-38373432IPR003657WRKY domain
PfamPF031062.2E-25374431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MTGTGNHGSL MEEWFPPLTP SPRTLMPSFL NEEFSSGPFS NLFSEHGTNK PHDQCEKSRE  60
LVSMGEEVPA QAVKDRFHKG FSLEPNLFSA TQKSNSHGGL AERRAARAGF SVSKIDTSRV  120
GSSAVIRSPV SIPPGLSPTT LLESPVFLYN KMAQPSPTTG TLPFLMATND KSTMPLAAKI  180
TEDSTFDNDV FSFQPHLGSK QPSLSTAEMD YGVYHQNQSV SSFPVVKDNS NATIVKAKAS  240
DSIFGNSPNS TDQKQDYETN QNAQGEGVEA RTAACFPVST HGDASLMGSQ DAVDVSSTLS  300
NEEDERATHG TVSIECEGDD DETESKRRKL DALGTSTIAT AVATSTIDMG AAASRAVREP  360
RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HPGCSVRKHV ERASHDLKSV  420
ITTYEGKHNH EVPAARNSGQ AGSSSANAPS ASQGSSSHRR HEPAQASFAH FGASPPFGSF  480
GHLGPATGNF RFGMVPPGMA IPMPSLGSLA PTKIVGNSSA MQGYPGLMMP VEPKAEPVSQ  540
PGFPTTNAAP SAYQQMMSRP PFGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38364434878Probable WRKY transcription factor 4
2lex_A8e-38364434878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.419880.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG410100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802032.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLA0A3L6T8Q00.0A0A3L6T8Q0_PANMI; Putative WRKY transcription factor 2
STRINGPavir.Bb02418.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-61WRKY DNA-binding protein 2