PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG417800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 336aa MW: 36134.7 Da PI: 7.5561

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG417800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.6	1.3e-12	25	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkr.tse 74 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + + Pavir.2KG417800.1.p 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWLDIAREVsvhcaddaaaagkppGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPAA 114 5************************************************98888889**************9987666653677 PP trihelix 75 ssstcpyfdqle 86 + ++++f +++ Pavir.2KG417800.1.p 115 AGPSWRFFARMD 126 8889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-13	23	127	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDGHGLPDAD AAPLAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWLDIAR 60 EVSVHCADDA AAAGKPPGGG NSAKTPNQCK NKIESMKKRY RAESAAVARA GPAAAGPSWR 120 FFARMDGLLK GPAVCSGQVQ QADLSNSIDL RAPAKAEAEV EADFAVQLTD AGPGAFSDLM 180 NIDTNGAAPE KAEKVGNSVQ KESRAADSDA NVSSPRSKVA NEDVEEVDKV WDRPKKRKST 240 EFDIAKSIEL LASSYLKIEH ARMEMYRETE RMRVEAEIKK GEMELKGTEI MAKTHLQIAK 300 LFAKRLKEGS GKTGGSSSVT AEVDTHTKKG ENGSG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4873	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG417800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2S3H213	0.0	A0A2S3H213_9POAL; Uncharacterized protein
STRING	Pavir.Bb02591.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-34	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pavir.2KG417800.1.p