PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG418200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 171aa    MW: 17767.8 Da    PI: 6.92
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG418200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144062123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+++F ++  L  H++ H
  Pavir.2KG418200.1.p 40 FACNYCHRRFYSSQALGGHQNAH 62
                         78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-63867No hitNo description
PROSITE profilePS5015711.0534067IPR007087Zinc finger, C2H2
PfamPF139121.6E-54062IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MENEPPPAPG GVSLDDLSPR RRRSSPAPAA DDRRPPGEAF ACNYCHRRFY SSQALGGHQN  60
AHKLERTLAK RSRDILAAPA PPPAVVFRPA TPECSSRDGF PLPTAYGATT WSSVGAEDAT  120
ALQAAPPAAQ SVVMDMAGWG AEAADGGCGR LGLGLGHGRN GEEIDLSLKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG418200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0868807e-55BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds.
GenBankBT0869177e-55BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds.
GenBankBT0871607e-55BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds.
GenBankEU9605227e-55EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804127.16e-72zinc finger protein 10-like
TrEMBLA0A2S3H2901e-70A0A2S3H290_9POAL; Uncharacterized protein
STRINGPavir.Bb02594.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-18zinc finger protein 2