PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG426300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 105aa    MW: 10815.8 Da    PI: 8.2176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG426300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-052951123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H++ H
  Pavir.2KG426300.1.p 29 YECSFCKRGFTNAQALGGHMNIH 51
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.3E-62853IPR007087Zinc finger, C2H2
SuperFamilySSF576675.69E-72855No hitNo description
PROSITE profilePS5015711.3232956IPR007087Zinc finger, C2H2
SMARTSM003550.0092951IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-42952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEGGFNKAGS PEASGEGGGT RRAPAGAYYE CSFCKRGFTN AQALGGHMNI HRKDRGGKPG  60
TAPPQQDDAG GSRTYGGGDV HLGLSLGRKD DVDLELRLGG YPYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG426300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9479766e-79EU947976.1 Zea mays clone 368057 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799920.11e-66zinc finger protein JAGGED-like
TrEMBLA0A2S3GXD63e-65A0A2S3GXD6_9POAL; Uncharacterized protein
TrEMBLA0A2T7ENG23e-65A0A2T7ENG2_9POAL; Uncharacterized protein
TrEMBLA0A3L6QRR23e-65A0A3L6QRR2_PANMI; Putative transcriptional regulator RABBIT EARS
STRINGPavir.Bb00955.1.p1e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-16C2H2 family protein