PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG445800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 855aa MW: 94042.9 Da PI: 7.3974

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG445800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	74	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + + Pavir.2KG445800.1.p 74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqddtagagvvsssSTAPAPRCPDSRTGCLASLTIKLIPsANAF 162 6***************99997666.************999999999987755555557899***********9999 PP FAR1 77 evtkleleHnHela 90 +vt+++ eHnH+la Pavir.2KG445800.1.p 163 RVTDFVAEHNHQLA 176 ************97 PP
2	FAR1	68.6	1.6e-21	224	323	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwev 78 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r a trtgC+a++++k + +++v Pavir.2KG445800.1.p 224 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEggaivnangvagsSGTPRPGPAPTRTGCQARMVIKITPCRTYRV 311 9***********9976665..899************9999*****99976677778899***************** PP FAR1 79 tkleleHnHela 90 +k+ +HnH+la Pavir.2KG445800.1.p 312 AKFFPDHNHPLA 323 ********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-19	74	176	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-18	224	323	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.9E-23	412	506	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.101	680	727	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-5	697	726	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-5	702	729	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASAANLA LTASTSAGGN DADADVPTSP 60 HLGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ 120 DDTAGAGVVS SSSTAPAPRC PDSRTGCLAS LTIKLIPSAN AFRVTDFVAE HNHQLASAAP 180 AVSLALLPPS SSHHSIATAA SLPDPRDGPH VDMHFETEED AYVFYNRYAE HVGFSVRRSY 240 KKRKRGMIVS RIFVCSREGV SDRAKQEGGA IVNANGVAGS SGTPRPGPAP TRTGCQARMV 300 IKITPCRTYR VAKFFPDHNH PLANPESVHK LRSHKMRARA HELGAGDLHR RKQGKGVQLG 360 DAGAALQYLE ELQLGNPSVY YAVGIGPDGK SAVNFFWADA KSIIDFRSFG DVVCFDTTYG 420 LNIYGRPFAL FVGVDNHKQL LVFGAALLYD ESIQSFKWVF EVFADAMRAR QPQTILIDER 480 PECAAAAAEV WPGSNRCTSV WHIYHNSKRH LKQAFESSKS FSNALSHFLF DYEDEMEFLS 540 AWERLIEKHD ISESEWLSGL FMEKEKWALP YQRTIFSADI LTTLQKDNMI NELKRELSEQ 600 EDILQFFRRY EVILEEHRSK KLHADVDGSQ VTLPIPSLRM LKQSSNAYTP EAFKMFQGEF 660 EAYMNCMSFP CGVIGTISEY KIVLDEKPSE NIVKFDALDG SASCSCKKFE AVGIQCCHVL 720 KVLDLKNIKE LPEQYILKRW RKDARSVHIG EEPTYGSGSV MQSASESRFN NMCRLASLIA 780 SRASKSEEAM SYIESQSSVL LKHLDNILQT GYPDMGNHAV ASSSQAISFV GSQHPDHTTQ 840 AGAVAQTTNG LMGL*

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASAANLA LTASTSAGGN DADADVPTSP  60
HLGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ  120
DDTAGAGVVS SSSTAPAPRC PDSRTGCLAS LTIKLIPSAN AFRVTDFVAE HNHQLASAAP  180
AVSLALLPPS SSHHSIATAA SLPDPRDGPH VDMHFETEED AYVFYNRYAE HVGFSVRRSY  240
KKRKRGMIVS RIFVCSREGV SDRAKQEGGA IVNANGVAGS SGTPRPGPAP TRTGCQARMV  300
IKITPCRTYR VAKFFPDHNH PLANPESVHK LRSHKMRARA HELGAGDLHR RKQGKGVQLG  360
DAGAALQYLE ELQLGNPSVY YAVGIGPDGK SAVNFFWADA KSIIDFRSFG DVVCFDTTYG  420
LNIYGRPFAL FVGVDNHKQL LVFGAALLYD ESIQSFKWVF EVFADAMRAR QPQTILIDER  480
PECAAAAAEV WPGSNRCTSV WHIYHNSKRH LKQAFESSKS FSNALSHFLF DYEDEMEFLS  540
AWERLIEKHD ISESEWLSGL FMEKEKWALP YQRTIFSADI LTTLQKDNMI NELKRELSEQ  600
EDILQFFRRY EVILEEHRSK KLHADVDGSQ VTLPIPSLRM LKQSSNAYTP EAFKMFQGEF  660
EAYMNCMSFP CGVIGTISEY KIVLDEKPSE NIVKFDALDG SASCSCKKFE AVGIQCCHVL  720
KVLDLKNIKE LPEQYILKRW RKDARSVHIG EEPTYGSGSV MQSASESRFN NMCRLASLIA  780
SRASKSEEAM SYIESQSSVL LKHLDNILQT GYPDMGNHAV ASSSQAISFV GSQHPDHTTQ  840
AGAVAQTTNG LMGL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17766	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG445800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804639.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025804640.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7EWC7	0.0	A0A2T7EWC7_9POAL; Uncharacterized protein
STRING	Pavir.Ba00914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-84	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2KG445800.1.p