PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG445800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 821aa MW: 90002.2 Da PI: 6.7477

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG445800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	3.8e-22	74	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + + Pavir.2KG445800.2.p 74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqddtagagvvsssSTAPAPRCPDSRTGCLASLTIKLIPsANAF 162 6***************99997666.************999999999987755555557899***********9999 PP FAR1 77 evtkleleHnHela 90 +vt+++ eHnH+la Pavir.2KG445800.2.p 163 RVTDFVAEHNHQLA 176 ************97 PP
2	FAR1	25.2	5.4e-08	255	289	56	90
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 a trtgC+a++++k + +++v+k+ +HnH+la Pavir.2KG445800.2.p 255 APTRTGCQARMVIKITPCRTYRVAKFFPDHNHPLA 289 569******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-19	74	176	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.5E-5	255	289	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-23	378	472	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.101	646	693	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-5	663	692	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-5	668	695	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASAANLA LTASTSAGGN DADADVPTSP 60 HLGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ 120 DDTAGAGVVS SSSTAPAPRC PDSRTGCLAS LTIKLIPSAN AFRVTDFVAE HNHQLASAAP 180 AVSLALLPPS SSHHSIATAA SLPDPRDGPH VDMHFETEED AYVFYNSDRA KQEGGAIVNA 240 NGVAGSSGTP RPGPAPTRTG CQARMVIKIT PCRTYRVAKF FPDHNHPLAN PESVHKLRSH 300 KMRARAHELG AGDLHRRKQG KGVQLGDAGA ALQYLEELQL GNPSVYYAVG IGPDGKSAVN 360 FFWADAKSII DFRSFGDVVC FDTTYGLNIY GRPFALFVGV DNHKQLLVFG AALLYDESIQ 420 SFKWVFEVFA DAMRARQPQT ILIDERPECA AAAAEVWPGS NRCTSVWHIY HNSKRHLKQA 480 FESSKSFSNA LSHFLFDYED EMEFLSAWER LIEKHDISES EWLSGLFMEK EKWALPYQRT 540 IFSADILTTL QKDNMINELK RELSEQEDIL QFFRRYEVIL EEHRSKKLHA DVDGSQVTLP 600 IPSLRMLKQS SNAYTPEAFK MFQGEFEAYM NCMSFPCGVI GTISEYKIVL DEKPSENIVK 660 FDALDGSASC SCKKFEAVGI QCCHVLKVLD LKNIKELPEQ YILKRWRKDA RSVHIGEEPT 720 YGSGSVMQSA SESRFNNMCR LASLIASRAS KSEEAMSYIE SQSSVLLKHL DNILQTGYPD 780 MGNHAVASSS QAISFVGSQH PDHTTQAGAV AQTTNGLMGL *

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASAANLA LTASTSAGGN DADADVPTSP  60
HLGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ  120
DDTAGAGVVS SSSTAPAPRC PDSRTGCLAS LTIKLIPSAN AFRVTDFVAE HNHQLASAAP  180
AVSLALLPPS SSHHSIATAA SLPDPRDGPH VDMHFETEED AYVFYNSDRA KQEGGAIVNA  240
NGVAGSSGTP RPGPAPTRTG CQARMVIKIT PCRTYRVAKF FPDHNHPLAN PESVHKLRSH  300
KMRARAHELG AGDLHRRKQG KGVQLGDAGA ALQYLEELQL GNPSVYYAVG IGPDGKSAVN  360
FFWADAKSII DFRSFGDVVC FDTTYGLNIY GRPFALFVGV DNHKQLLVFG AALLYDESIQ  420
SFKWVFEVFA DAMRARQPQT ILIDERPECA AAAAEVWPGS NRCTSVWHIY HNSKRHLKQA  480
FESSKSFSNA LSHFLFDYED EMEFLSAWER LIEKHDISES EWLSGLFMEK EKWALPYQRT  540
IFSADILTTL QKDNMINELK RELSEQEDIL QFFRRYEVIL EEHRSKKLHA DVDGSQVTLP  600
IPSLRMLKQS SNAYTPEAFK MFQGEFEAYM NCMSFPCGVI GTISEYKIVL DEKPSENIVK  660
FDALDGSASC SCKKFEAVGI QCCHVLKVLD LKNIKELPEQ YILKRWRKDA RSVHIGEEPT  720
YGSGSVMQSA SESRFNNMCR LASLIASRAS KSEEAMSYIE SQSSVLLKHL DNILQTGYPD  780
MGNHAVASSS QAISFVGSQH PDHTTQAGAV AQTTNGLMGL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17766	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG445800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804639.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025804640.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7EWC7	0.0	A0A2T7EWC7_9POAL; Uncharacterized protein
STRING	Pavir.Ba00914.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-76	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2KG445800.2.p