PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG458100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 126aa    MW: 12746.3 Da    PI: 6.4886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG458100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044060323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         Cp Cg  F     L  H+r+H
  Pavir.2KG458100.1.p 40 CPVCGLEFAVGQALDGHMRRH 60
                         ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-73761IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6213865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
METGVDAAGV LVFLSQQRQR HGSGGGARTA GLATRGVHGC PVCGLEFAVG QALDGHMRRH  60
RTTAAAGTFR SGDATSVEGE DVGAGGICLD LNLAPSENCA KCQRNAVLGD TVQGVQNTLI  120
LDCPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG458100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805950.11e-52zinc finger protein ZAT12-like
TrEMBLA0A2T8KJA45e-47A0A2T8KJA4_9POAL; Uncharacterized protein
STRINGPavir.J32634.1.p9e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-11C2H2 family protein