PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG484500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 243aa MW: 27883.7 Da PI: 7.1635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG484500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.8	8.8e-19	18	97	11	90
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +raetrt+C+ ++ + +++ +++++v++l leHnH l+ Pavir.2KG484500.1.p 18 GFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKCPRAETRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 97 9*******************************999.999***********9888777*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-14	17	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFNTIDEAG MFWISYGGFE VRKMYTNKRK SDGKVRSCRY VCANEGHRKK DKRDHLTKCP 60 RAETRTDCQV RMGLIMDREK ETYKVADLIL EHNHMLQLPQ TSHLMVSQRK ISELQGFEIE 120 TADDAGIGPK AAHELACVQV GGSSDLSYTL RDHKNYLRAK RQREMAYGQA GSMLMYFQDK 180 IAENPSFQYA LQMDIEEQIA NIFWVDAKML TDYAYFGDVV SFDTTFGTNK ESRPFGVFVG 240 FN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG484500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB108421	0.0	AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence.
GenBank	AC077693	0.0	AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876513.1	1e-162	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2S3HDK1	1e-176	A0A2S3HDK1_9POAL; Uncharacterized protein
TrEMBL	A0A2T8KLJ4	1e-172	A0A2T8KLJ4_9POAL; Uncharacterized protein
STRING	OS10T0571900-00	1e-161	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-40	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2KG484500.1.p