PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG489400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 964aa    MW: 105542 Da    PI: 8.5384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG489400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.5e-19459558198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W ++++y  +++s++yvl+ G     ++ +L++gD+v+F++++
  Pavir.2KG489400.1.p 459 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWIFQFRYwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID 547
                          89**************************555566778*****************89999999***9.********************987 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Pavir.2KG489400.1.p 548 -PEGKLIMGFRK 558
                          .77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-30456561IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-19456558IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-22457558No hitNo description
PfamPF023625.0E-16459558IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35459560IPR003340B3 DNA binding domain
SMARTSM010191.7E-21459559IPR003340B3 DNA binding domain
PROSITE profilePS5105013.981714764IPR011124Zinc finger, CW-type
PfamPF074963.7E-11719761IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MSSPAPQQAP PPPPPPPPPA PAPVSATPIS VQQPPNQPKP PAPPPQQQPQ PAGPVPTPQP  60
PSPAQLLNLG PHPPMYRGPI CWNSYCKDPD PNSFGRRGWK VRSGPPFSVY ADLCGRCYSQ  120
FEQGIYCETF HSEEGGWRNC ESCGTRVHCG CIVSIHKYQL RDTGGVDCAK CARNTRTAMA  180
PPSPVWASPM HNSQNVADKK DIPVKSWRPP AGQISSQWRQ TNMWSVSSIQ SDLQQRLAFE  240
FDRPSGSEKL LPGRTFIHAQ DSRKFDDMHD RPATPAGINH IVRERDANGH GQPTNMDPAY  300
SYTLYHRDGS HPNNIHDPSH HGGENDSLSS RKVAMPDAST NVDTGFKLDS HHPSILKDDP  360
PSLSVGLASN FSSQNGPKDH IRIAPSQQQA QMVSSSLQKQ FYPHTVSGYN ELQAQMRNGR  420
PRMDAKARSQ LLPRYWPRIT DQEIQHLSSD LNSVITPLFE KMLSASDAGR IGRLVLPKKC  480
AEAYFPPISQ PEGLPLKVQD ASGKEWIFQF RYWPNNNSRM YVLEGVTPCI QSMQLQAGDT  540
VTFSRIDPEG KLIMGFRKAT NISSEQEQTT KPANGAPATS EANGKVSASD PSPNAAVSRQ  600
NKVSTETKSS SPVEQGTTSK IEKDGLTQKE GPGTASSSPG PVKRKAANLT PKNKRLRMEN  660
EESMELKITW EEAQELLRPP PKAPNVVIVD GHEFEEYEEP PILGRKTYFV ADQSGSNHQW  720
AQCENCSKWR KLPVDALMPS KWTCSDNKWD SERSSCEAAQ EISMEELAEL IPIKSGPGGA  780
KKPKARVEGE TIDASDGLDT LANLAILGEG EALPSQPTTK HPRHRPGCSC IVCIQPPSGK  840
GPKHKQTCTC NVCMTVRRRF RTLMLRREKR AATDSPRRKD TGQSSETGRQ SGSSRLATNA  900
SATGSSQKAA DAKTRAPEDM AVDHKVSSSP VKNHIDLNIQ PERDDEQSPK SGAAGALSRD  960
NPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-664375662131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74000.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG489400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548470.0BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800002.10.0B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A3L6T6A80.0A0A3L6T6A8_PANMI; Uncharacterized protein
STRINGPavir.Bb03074.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-144high-level expression of sugar-inducible gene 2