PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG489600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 690aa    MW: 78928.2 Da    PI: 6.4227
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG489600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.22.1e-2636122189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +fY+ YA ++GF+vr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH+l
  Pavir.2KG489600.1.p  36 EFYSMYAGKIGFNVRRASMTVN-NENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQL 122
                          6****************99998.6666****************9998.99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2236122IPR004330FAR1 DNA binding domain
PfamPF105513.2E-23239332IPR018289MULE transposase domain
PfamPF044342.5E-7507553IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.794507554IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-7529556IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MLKAKKIRRK ARAVRENLVD DTVSTPEFEN EDEAYEFYSM YAGKIGFNVR RASMTVNNEN  60
VITRRMFVCS KEGFREKKRG AKRVKKPRPE TRTGCPACMV IRLGTNGKYQ VTEFVTFHNH  120
QLGAVAASDL VMASQSTEND QDDGFDLADR SPDDSVHKQN LINESVTINF LEGRSCKRYK  180
CTKTPHYGDV GATLEYLQRM QHDNPSFFYA VKSDENGNFT IFFWADSKSI VDFVHFGDVV  240
CFDSGYALQG YGRPLALFTG LNHHKQTVVF GAALLYDESD EAFRWLLDTF KMAMNGTHPK  300
TLLTDRSAAI SEAIAATLPA TAHRYCVWQI YQHALQQLSQ AFHGSRTLEG NFKRCLFDCE  360
DEEEFLTAWK EMLEKYDLED NQWLADLFSI KEKWALPYGR DAFYADMKSV QQKESLTSEL  420
KKHLSLEYGL LNFFEQFERL LCDRRSAELE FDVNANQSTK KPPSMRMLRQ AANVYTPAAF  480
KMFEREFELY MDCMLYSCGE MGTISEYRIS VEDNPKDHFV KFDSHNSMMN CTCKTFEFIG  540
IPCRHMLKVL DTRNIKDLPV QYIVKRWRKD AKSGPSNSGC AFSFDGDPES AQTKRYNLLC  600
RIFSISAARA ATSAESFTYM ENQSNILMDQ VEQVIQTRPP DIVDLIGANC DRTQNSVDNI  660
VTEGIHSHTN FLNGSADGSL TFPFTLDYR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.312070.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG489600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622350.0BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.
GenBankKJ7277310.0KJ727731.1 Zea mays clone pUT5671 FAR1 transcription factor (FAR1.10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800025.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025800026.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025800027.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6QUY10.0A0A3L6QUY1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGPavir.Bb03075.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5