PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG490400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 189aa    MW: 19976.7 Da    PI: 10.0182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG490400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83.1e-091045242
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeA 42
                         +ykGVr+++ + +W+ eIrd +     +   ++lg+f +   A
  Pavir.2KG490400.1.p 10 QYKGVRRRS-WSKWATEIRDlV-----KiVCIWLGTFSS-SRA 45
                         69****887.**********88.....56********88.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-111046IPR001471AP2/ERF domain
PROSITE profilePS5103211.681046IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-71046IPR016177DNA-binding domain
SMARTSM003805.8E-41058IPR001471AP2/ERF domain
PRINTSPR003677.9E-51122IPR001471AP2/ERF domain
PRINTSPR003677.9E-53349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPSSRRKTAQ YKGVRRRSWS KWATEIRDLV KIVCIWLGTF SSSRAACSRG APWHRGEQGE  60
GEGEGGAPRV GAERGEAEPS TRGVEREGRG GSDGRDEGVA TSAGVGGERN EEGGAARSAG  120
VGGERDEEED GAARLGEWRG GGGGWSSERG GGRCGAVRGR SSREARRRGT AREVVEDLEH  180
RAVARREG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416RRKTAQYKGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG490400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5683422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-10ERF family protein