PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG492900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 83aa    MW: 9796.18 Da    PI: 9.5197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG492900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.9e-101953137
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                         r +WT+eE+e+ +da k++G   W+ I +++  ++t+
  Pavir.2KG492900.1.p 19 REKWTEEEHEKSLDALKLYGRS-WHQIQEHVD-TKTA 53
                         789*****************55.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-10553IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-71953IPR009057Homeodomain-like
PfamPF002492.3E-71953IPR001005SANT/Myb domain
CDDcd001672.19E-52154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MLTQQFKYVR KPYTITKQRE KWTEEEHEKS LDALKLYGRS WHQIQEHVDT KTAVPKVLNP  60
HDSCDKFSCY TRNLARPVPH LA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.130241e-52leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG492900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.13e-20uncharacterized protein LOC101785788
SwissprotB3H5A82e-19RVE7_ARATH; Protein REVEILLE 7
SwissprotF4J2J62e-19RVE7L_ARATH; Protein REVEILLE 7-like
TrEMBLA0A0A9D8412e-19A0A0A9D841_ARUDO; Uncharacterized protein
TrEMBLA0A453TC592e-19A0A453TC59_AEGTS; Uncharacterized protein
STRINGPavir.J08553.1.p4e-56(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.19e-22MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]