PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG500900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 163aa    MW: 17428.9 Da    PI: 7.3414
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG500900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY39.91.5e-121460650
                YABBY  6 sseqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnl 50
                          +e++  vqCnfC til+v vP      +++v+v+CG C  +lsv+l
  Pavir.2KG500900.1.p 14 LPERLGCVQCNFCATILLVGVPCGGglQLRTVAVQCGSCGGILSVTL 60
                         5899999***************98622567899************98 PP
2YABBY104.42.3e-3297159106168
                YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                            e    p v++PPe++qr Psayn+fikeei+rika++P+i+h+eafsaa+knWah+P+i  
  Pavir.2KG500900.1.p  97 AAENHAFPAVMKPPERKQRTPSAYNCFIKEEIRRIKATDPNITHKEAFSAASKNWAHLPRIQQ 159
                          3334445669**************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-4015158IPR006780YABBY protein
SuperFamilySSF470951.96E-8104156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-5107158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASSARHPSF VGLLPERLGC VQCNFCATIL LVGVPCGGGL QLRTVAVQCG SCGGILSVTL  60
PPPPPAAYSA ELPPQEPGVD PAPRDSDESS GEDREMAAEN HAFPAVMKPP ERKQRTPSAY  120
NCFIKEEIRR IKATDPNITH KEAFSAASKN WAHLPRIQQK EN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG500900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634891e-46EU963489.1 Zea mays clone 263245 axial regulator YABBY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801746.13e-98protein YABBY 7-like
SwissprotA2PZN81e-56YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A2S3H3E81e-98A0A2S3H3E8_9POAL; Uncharacterized protein
TrEMBLA0A2T7EXL61e-98A0A2T7EXL6_9POAL; Uncharacterized protein
STRINGPavir.Bb03145.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.16e-33YABBY family protein