PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG507900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 318aa    MW: 33741.9 Da    PI: 8.813
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG507900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822205.71.3e-63121532141
               DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                          g gr+ptwkErEnnkrRERrRRaiaaki++GLRa Gnyklpk++DnneVlkALcreAGwvvedDGttyrkg+kp+           +sp+
  Pavir.2KG507900.1.p  12 GLGRTPTWKERENNKRRERRRRAIAAKIFTGLRALGNYKLPKHCDNNEVLKALCREAGWVVEDDGTTYRKGCKPP--------PGMMSPC 93 
                          679************************************************************************........4557889 PP

               DUF822  92 sslq.sslkssalaspvesysaspksssfpspssldsislasa.........asllpvls 141
                          ss+q +s++ss+ +spv+sy+asp+sssfpsp++ld  s +++         +sllp+l+
  Pavir.2KG507900.1.p  94 SSSQlLSATSSSYPSPVPSYHASPASSSFPSPTRLDPSSGSNThnpgaaaavSSLLPFLR 153
                          998888999999*************************99987766666666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.1E-6113154IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTSGAAVAAT GGLGRTPTWK ERENNKRRER RRRAIAAKIF TGLRALGNYK LPKHCDNNEV  60
LKALCREAGW VVEDDGTTYR KGCKPPPGMM SPCSSSQLLS ATSSSYPSPV PSYHASPASS  120
SFPSPTRLDP SSGSNTHNPG AAAAVSSLLP FLRGLPNLPP LRVSSSAPVT PPLSSPTAAS  180
RPPTKVRKPD WDAVAVDPFR HPFFAVSAPA SPTRARRREH PDTIPECDES DVCSTVDSGR  240
WISFQMSAAT TAPASPTYNL VNPSSGASAS TSMELDGMAA AEFEFDKGRV TPWEGERIHE  300
VAAEELELTL TLSVGAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-281595372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-281595372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-281595372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-281595372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.144920.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid biosynthetic genes. May act as transcriptional repressor by binding the brassinosteroid-response element (5'-CGTGCG-3') in the promoter of GRAS32 (AC Q9LWU9), another positive regulator of brassinosteroid signaling (By similarity). {ECO:0000250}.
UniProtPositive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid (BR) biosynthetic genes (PubMed:17699623, PubMed:19220793). May act as transcriptional repressor by binding the brassinosteroid-response element (BREE) (5'-CGTG(T/C)G-3') in the promoter of DLT (AC Q9LWU9), another positive regulator of BR signaling (PubMed:19220793). Acts as transcriptional repressor of LIC, a negative regulator of BR signaling, by binding to the BRRE element of its promoter. BZR1 and LIC play opposite roles in BR signaling and regulation of leaf bending (PubMed:22570626). {ECO:0000269|PubMed:17699623, ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22570626}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00237DAPTransfer from AT1G75080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG507900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:22570626}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698260.0EU969826.1 Zea mays clone 336150 BES1/BZR1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802391.11e-168protein BZR1 homolog 1-like
SwissprotB8B7S51e-135BZR1_ORYSI; Protein BZR1 homolog 1
SwissprotQ7XI961e-135BZR1_ORYSJ; Protein BZR1 homolog 1
TrEMBLA0A3L6TE711e-169A0A3L6TE71_PANMI; Uncharacterized protein
STRINGPavir.Bb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54743453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.32e-43BES1 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]