PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG509600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 814aa    MW: 88932.1 Da    PI: 7.2837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG509600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05116138123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk F r  nL+ H r H
  Pavir.2KG509600.1.p 116 FVCEVCGKGFQRDQNLQLHRRGH 138
                          89******************988 PP
2zf-C2H215.54.9e-05195216223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           Cp Cgk++  + +Lk H +t+
  Pavir.2KG509600.1.p 195 ACPRCGKRYAVQADLKAHAKTC 216
                          6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.69E-9115138No hitNo description
PROSITE profilePS5015711.635116138IPR007087Zinc finger, C2H2
SMARTSM003550.014116138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5116138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SMARTSM0035585159189IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5182215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.69E-9189214No hitNo description
PROSITE profilePS501578.663194222IPR007087Zinc finger, C2H2
SMARTSM0035590194214IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MTPHPTAPEP GPEQAAPAPE AALPLAEAAP APVKKKRNLP GTPGERAHPS PSRVASGLVC  60
VLVLLLPPFP APHRVLCSQR FVCSLARSPC ALPAAADPDA EVIALSPGTL LATNRFVCEV  120
CGKGFQRDQN LQLHRRGHNL PWRLRQRGPG AAPPRRRVYV CPEPGCVHHS PARALGDLTG  180
IKKHFCRKHG EKRWACPRCG KRYAVQADLK AHAKTCGTRE YRCDCGTLFT RRDSFVTHRA  240
FCGALVEEAG RALAPPAPPS PRPPDLEAEE NVDKDKEKGQ EEEENEDSAV AEAEQPQRVE  300
APVPEAPQRI PSPPPLPQEP PRRPSPPPLP KEPLRRPSPP PLPKEPPHRP SPPPLPKEPQ  360
LFPSPLPFPL EQRPVVAVVP NVDEPEVVPE TTVAAKLEDE ADQDEDTCFQ EADQFKEAEL  420
EVSNLLDKDT PMLPCFLPSP SEAIGTDGSS TTCGAGGSVS NSIVPSTATN TFAGLFTSAT  480
TSTTSQSRSL RDLIGVDPTF LCLAIGAPSS LFPQTSASNP GTFAAPPAPH MSATALLQKA  540
AEVGASQSSS SFLKEFGLAS SSTSSPPSKQ PPQGRFTENS TLPWHHRSNQ HMEMERHRNH  600
QQREMESSSQ PWHHRSTQQM EMERHRNNQQ REMESRSRRW HHHRSDQQMD MERHRSNQQM  660
QMEYSTQRWP NHRSNQQMEL SNQQMQMESS TQRWPHHRSS QQMELMERHQ WSSQQMERES  720
RAMLSGGLGL GLAYESGNSG LPDLMMGPSP LFGPKPATLD FLGLGIGGTM GGSTANGGLP  780
ALMVGGELGM GSSAQVPAPW EDANRKTNGR TIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29190251364Zinc finger protein JACKDAW
5b3h_F1e-29190251364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG509600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802400.10.0protein indeterminate-domain 1-like
TrEMBLA0A2T7EXX20.0A0A2T7EXX2_9POAL; Uncharacterized protein
STRINGPavir.Bb03216.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.23e-76C2H2 family protein