PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG509600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 761aa    MW: 83430.5 Da    PI: 6.9307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG509600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056385123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F r  nL+ H r H
  Pavir.2KG509600.2.p 63 FVCEVCGKGFQRDQNLQLHRRGH 85
                         89******************988 PP
2zf-C2H215.64.6e-05142163223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           Cp Cgk++  + +Lk H +t+
  Pavir.2KG509600.2.p 142 ACPRCGKRYAVQADLKAHAKTC 163
                          6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-86285No hitNo description
SMARTSM003550.0146385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-56385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6356385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM0035585106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-8136161No hitNo description
SMARTSM0035590141161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663141169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MTPHPTAPEP GPEQAAPAPE AALPLAEAAP APVKKKRNLP GTPDPDAEVI ALSPGTLLAT  60
NRFVCEVCGK GFQRDQNLQL HRRGHNLPWR LRQRGPGAAP PRRRVYVCPE PGCVHHSPAR  120
ALGDLTGIKK HFCRKHGEKR WACPRCGKRY AVQADLKAHA KTCGTREYRC DCGTLFTRRD  180
SFVTHRAFCG ALVEEAGRAL APPAPPSPRP PDLEAEENVD KDKEKGQEEE ENEDSAVAEA  240
EQPQRVEAPV PEAPQRIPSP PPLPQEPPRR PSPPPLPKEP LRRPSPPPLP KEPPHRPSPP  300
PLPKEPQLFP SPLPFPLEQR PVVAVVPNVD EPEVVPETTV AAKLEDEADQ DEDTCFQEAD  360
QFKEAELEVS NLLDKDTPML PCFLPSPSEA IGTDGSSTTC GAGGSVSNSI VPSTATNTFA  420
GLFTSATTST TSQSRSLRDL IGVDPTFLCL AIGAPSSLFP QTSASNPGTF AAPPAPHMSA  480
TALLQKAAEV GASQSSSSFL KEFGLASSST SSPPSKQPPQ GRFTENSTLP WHHRSNQHME  540
MERHRNHQQR EMESSSQPWH HRSTQQMEME RHRNNQQREM ESRSRRWHHH RSDQQMDMER  600
HRSNQQMQME YSTQRWPNHR SNQQMELSNQ QMQMESSTQR WPHHRSSQQM ELMERHQWSS  660
QQMERESRAM LSGGLGLGLA YESGNSGLPD LMMGPSPLFG PKPATLDFLG LGIGGTMGGS  720
TANGGLPALM VGGELGMGSS AQVPAPWEDA NRKTNGRTIL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29137198364Zinc finger protein JACKDAW
5b3h_F2e-29137198364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG509600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802400.10.0protein indeterminate-domain 1-like
TrEMBLA0A2T7EXX20.0A0A2T7EXX2_9POAL; Uncharacterized protein
STRINGPavir.Bb03216.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-87C2H2 family protein