PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG511300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 578aa    MW: 61619.6 Da    PI: 6.5105
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG511300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.6e-32195252260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g Hnh+k
  Pavir.2KG511300.1.p 195 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGLHNHPK 252
                          8****************************************.***************85 PP
2WRKY107.56.4e-34368426159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Pavir.2KG511300.1.p 368 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 426
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27185253IPR003657WRKY domain
PROSITE profilePS5081123.296189253IPR003657WRKY domain
SuperFamilySSF1182907.98E-25193253IPR003657WRKY domain
SMARTSM007744.4E-35194252IPR003657WRKY domain
PfamPF031063.7E-24195251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-38353428IPR003657WRKY domain
SuperFamilySSF1182905.36E-30360428IPR003657WRKY domain
PROSITE profilePS5081138.297363428IPR003657WRKY domain
SMARTSM007746.5E-40368427IPR003657WRKY domain
PfamPF031061.2E-26369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGSGGSP EKPVLADRRV AALAGAGAGA RYKAMSPARL PISREPCLTI  60
PAGFSPGALL ESPVLLNNFK VEPSPTTGTL SMAAIINKST HLDILPSPRE KSAGSGNEDG  120
DSRDFEFKPH LSCQPAESIH QTANISSVPN QPVAIVGPSD KMPAEVGTSE MNQMNSSENA  180
AQETQTENVA EKSAEDGYNW RKYGQKHVKG SENPRSYYKC THPNCEVKKL LERSLDGQIT  240
EVVYKGLHNH PKPQPNRRLA AGAVPSSQGE ERYDGAAPVE DKPSNIYPNL CNQVHSAGMI  300
DPVPGPASDD DGDGGGGRSY PGDDANEDDD LDSKRRKMES AGIDAALMGK PNREPRVVVQ  360
TVSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHTGCP VRKHVERASH DPKSVITTYE  420
GKHNHEVPAS RNASHEMSAA PMKPAVHPIN SSMPGLGGMM RACDARAFTN QYSQAAESDT  480
ISLDLGVGIS PNHSDATNHM QPSVPEPMQY QMQHMAPVYG SMGFPGMPVP TVPGNAASSV  540
YGSREEKANE GFTFKATPLG RSANLCYSSA GNLVMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36195429878Probable WRKY transcription factor 4
2lex_A3e-36195429878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.62460.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG511300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
GenBankBT0617140.0BT061714.1 Zea mays full-length cDNA clone ZM_BFb0176N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801894.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A3L6QQW00.0A0A3L6QQW0_PANMI; WRKY transcription factor SUSIBA2-like
STRINGPavir.Bb03225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-118WRKY family protein