PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG541100.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 264aa MW: 29848.4 Da PI: 6.857

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG541100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.4e-06	34	83	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ ++erE+r Rd+ N+ f eL +l ++ + + Ka iL +++ +k+L Pavir.2KG541100.2.p 34 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRMLKDL 83 678899**********************97....57788999999999988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-12	30	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	30	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.41E-4	31	88	No hit	No description
PROSITE profile	PS50888	11.293	33	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-5	34	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MVPRDKAHSA GRAPTENLIQ RPVLNNKCEK KAPKKVHKSE REKRKRDKQN DLFGELGNML 60 EPDRQNNGKA CILSDTTRML KDLLSQVESL RQENGSLKNE SRYVALERNE LLDENNMIRN 120 EISELQNELR MRMEGNPIWS HDATRSNLTA AHPHTTVFVL QHSPHPPVIA TMAPPLQQLE 180 VLEQSYTTSR RELQLFPEAA STEDTEPQQD QGISNHVTRP QARYATRMTT LPAHVYPVLQ 240 RMEDEQCSSG TTGSGDEGAI CNH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20399	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG541100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804247.1	1e-173	transcription factor BHLH062-like
Refseq	XP_025804248.1	1e-173	transcription factor BHLH062-like
Swissprot	Q69V10	1e-114	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A2S3H2P0	1e-172	A0A2S3H2P0_9POAL; Uncharacterized protein
STRING	Pavir.Bb03409.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.2KG541100.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]