PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG546800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1028aa    MW: 114346 Da    PI: 5.7813
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG546800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.3e-56211362117
                 CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+een
  Pavir.2KG546800.1.p  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEEN 110
                          5679************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          ++fqrr+ywlLee + +ivlvhyle 
  Pavir.2KG546800.1.p 111 ENFQRRTYWLLEEGFMNIVLVHYLEI 136
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.56216142IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.2E-6440527IPR013783Immunoglobulin-like fold
PfamPF018338.0E-6441514IPR002909IPT domain
SuperFamilySSF812967.7E-18441527IPR014756Immunoglobulin E-set
CDDcd002046.44E-14619731No hitNo description
SuperFamilySSF484031.71E-17625733IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.8E-18633733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.661639733IPR020683Ankyrin repeat-containing domain
PfamPF127968.8E-8645734IPR020683Ankyrin repeat-containing domain
SMARTSM002480.14672704IPR002110Ankyrin repeat
PROSITE profilePS500889.19672704IPR002110Ankyrin repeat
SMARTSM00248290711740IPR002110Ankyrin repeat
SuperFamilySSF525402.92E-8845897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.919847876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055848867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.688870894IPR000048IQ motif, EF-hand binding site
PfamPF006128.4E-5872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1028 aa     Download sequence    Send to blast
MAEIRKYAMS NQAPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTIKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEIKGGK QNFNRAKEAE ENAGLSADSP ACSNSFASQS QVASQSMDAE  180
SPISGQISEY EDAETDNCRA SSRYHPFTEM QQPVDGIMMD NLLGASAPSI SVNNLGYLGE  240
MQPTPANINN HFITHNDVST AFSETAAGLR GGPRTSIDSV RFAEPYPEYP GGFTEPTHYS  300
SVATVGNNLD DSLQTFMSEA LYTNNLTQKE VDALSAAGMT SSQVDNDGYT DQGARYPLLK  360
QSSLDPFKIE PDGLKKFDSF SRWMSNELPE VADLDIKSSS DAFWSTTETV NVADGSSIPI  420
NEQLDAFVVS PSLSQDQLFS IIDVSPSWAY NGTKTKVIIT GTFLTRKEDV ENCKWSCMFG  480
DVEVSAEVLV DGSLRCYTPV HHSGRVPFYV TCSNRVACSE VREFEFRDSE THYMDTSDLH  540
TTGINEMHLH IRLDKLLSLG PEDYEKYVLS NGNKSDLIDT INSLMLDDKL SNLALPSDEK  600
ELSTVRDQNL EKQVKEKLYY WLIHKIHDDG KGPNVLGKEG QGVIHLVAAL GYDWAIKPIV  660
AAGVNVNFRD IRGWTALHWA ASCGRERTVG ALIANGAASG ALTDPTQQFP SGRTPADLAS  720
ENGHKGIAGF LAESALTSHL SALTLKESQG GNVEEICGLA AAEDFAEPSS AQLACVDSQA  780
ESLKDSLGAV RKSTQAAARI FQAFRVESFH RKKVIEYGDD DCGLSDERTL SLISLKNAKP  840
GHSDMPMHSA AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKNY RKVVWSVGIV  900
EKVILRWRRK RRGLRGFQPE KQLEGPSSQI QPVKSEAEDE YDFLKDGRRQ AEGRLQRALA  960
RVHSMTQYPE ARDQYRRLQN CVNELQESQA MQDMMLSDSA GADGNDLMAE LEGLCRGDGD  1020
APMSTIS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.306230.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG546800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800735.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2T7EYS20.0A0A2T7EYS2_9POAL; Uncharacterized protein
STRINGPavir.Ba00386.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein