PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG553100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 327aa    MW: 36460.2 Da    PI: 4.8396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG553100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19100150155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAaka++  +++++g
  Pavir.2KG553100.1.p 100 TQYRGIRRRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAAKAYDVEALRIRG 150
                          58********.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.37E-31100160No hitNo description
Gene3DG3DSA:3.30.730.108.6E-32101159IPR001471AP2/ERF domain
SMARTSM003805.8E-37101164IPR001471AP2/ERF domain
PROSITE profilePS5103224.764101158IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22101159IPR016177DNA-binding domain
PfamPF008471.2E-11101150IPR001471AP2/ERF domain
PRINTSPR003672.2E-11102113IPR001471AP2/ERF domain
PRINTSPR003672.2E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCGGAILSDL YSPVRRTVTA GDLWGESGST KNVKNWKRRS SWKFDEDDDD FEADFEDFND  60
CSSEEEVDFV REEKEFQLNS SNFVELNGHT TKVASRKRKT QYRGIRRRPW GKWAAEIRDP  120
QKGVRVWLGT FSTAEEAAKA YDVEALRIRG KKAKVNFPNT ITAAGKHHRQ HVARPAKRMS  180
QESLKSSDAS GHVVSAGSST DGTVVKIELI ESPASPLPVS SAWLDAFELN QLGGLRHLEA  240
DGRETTEETD HETGVTADMV FGDGKVRLSD DFASYEPYPN FMQLPYLEGN SYENIDTLFN  300
GEAAQDGVNI GGLWNFDDVP MDRGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20101163568ATERF1
3gcc_A1e-20101163568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.103320.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG553100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801024.10.0ethylene-responsive transcription factor ERF073-like
RefseqXP_025801025.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2S3H3X90.0A0A2S3H3X9_9POAL; Uncharacterized protein
STRINGPavir.Bb03337.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-35ERF family protein