PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG555100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 725aa    MW: 82710.2 Da    PI: 7.4275
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG555100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.64.1e-144480135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  Pavir.2KG555100.1.p 44 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 80
                         5667777777************************876 PP
2FAR182.85.9e-26114201191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn+YA ++GFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ eHnH+la
  Pavir.2KG555100.1.p 114 EFYNKYAGHIGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLA 200
                          6*********************6666.899*************9988..99*************************************98 PP

                 FAR1  91 p 91 
                          p
  Pavir.2KG555100.1.p 201 P 201
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-63793IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-104091No hitNo description
Gene3DG3DSA:3.30.50.103.9E-114382IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.77E-74381No hitNo description
PfamPF003201.3E-114479IPR000679Zinc finger, GATA-type
PfamPF031013.3E-23114201IPR004330FAR1 DNA binding domain
PfamPF105514.2E-26324418IPR018289MULE transposase domain
PROSITE profilePS509669.916592639IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-6609638IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-6614641IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MMHMLVAPDG SEMELQPYGA PPVEQELELL RDNADDGLEG HVRCLRCGIS GNATPHMRRG  60
PDGPRTLCNA CGIAYRKGKM RRMIEAEPPI DEAALAKLVP EVGMEFESEE KAYEFYNKYA  120
GHIGFSVRKS TSHKSSENIT KVRTFVCSRE GYNRDKKSLE AKKPRLDTRI GCPARLIIKV  180
TPECKYRVTD FKAEHNHQLA PPSTMHMLRS QRILTELQSG EAELSDDSVV TPTTKATGDL  240
VVRQVSFLRS ISLLPADYKN YLRSKRMKTM QPGDGGAILK YLQTMQMDNP SFFYTMQIDE  300
DDKLTNFFWA DPKSRDDFNY FGDVLCLDTT YKINGYGRPL ALFLGVNHHK QTIIFGAAML  360
YDESFESYKW LFESFKIAMH GKQPAVALVD QSIPLSSAMA AAWPNTTQRI CAWHVYQNSL  420
KHLNHVFQGS KTFAKDFSKC VFGYEDGDEF LYAWRSMLEK YDLRHNEWLS KVFDEKEQWA  480
LAYDRHIFCA DIISALQAES FSSILKKFLS PQLDLVSFFK HYERAVDEHR YAELQADFQA  540
SQSYPRIPPA KMLKQTAHTY TPVVFEIFRK EFELFMDSVL FICGEAGTTS EYKVASSEKP  600
KEHFVRFDSS DCSCVCTCRK FEFMGIPCCH MLKVLDYRNI KELPQKYLLK RWRRTAKSAN  660
EDSEGNATNA NGSSLNAPAP AANHHGLQSK CNDSSLNNND TSTCTLQHHW LLKQWMGCHE  720
APLN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.179650.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG555100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558180.0BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds.
GenBankHQ8587820.0HQ858782.1 Zea mays clone UT1768 FAR1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801139.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_025801140.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2T7EYJ90.0A0A2T7EYJ9_9POAL; Uncharacterized protein
STRINGPavir.Bb03328.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5