PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG558700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 101aa    MW: 11507.2 Da    PI: 5.5698
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG558700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.37.2e-262889263
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEE CS
         HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFk 63
                         Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y + 
  Pavir.2KG558700.1.p 28 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYLYC 89
                         9**********************************************************775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-281888IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-222497IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-232790IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.3E-222888IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-162851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-166678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-167991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMESSAH AKPVPAPFLT KTYQLVDDPC TDHIVSWGED DTTFVVWRPP  60
EFARDLLPNY FKHNNFSSFV RQLNTYLYCC TLRQDGKALV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-1711003101Heat shock factor protein 1
5d5v_B5e-1711003101Heat shock factor protein 1
5d5v_D5e-1711003101Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG558700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541481e-122BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804091.11e-57heat stress transcription factor B-4b-like
SwissprotQ7XHZ06e-54HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A1E5VCU82e-56A0A1E5VCU8_9POAL; Heat stress transcription factor B-4b
TrEMBLA0A2S3H4D82e-56A0A2S3H4D8_9POAL; Uncharacterized protein
TrEMBLA0A2T7EZ902e-56A0A2T7EZ90_9POAL; Uncharacterized protein
TrEMBLA0A3L6QPD03e-56A0A3L6QPD0_PANMI; Heat stress transcription factor B-4b-like
STRINGPavir.J32257.1.p4e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-42heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]