PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG571400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 236aa    MW: 25896.8 Da    PI: 9.1618
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG571400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-066182826
                         GGGGTS...--TTTTT-SS-SS CS
              zf-CCCH  8 ffartG...tCkyGdrCkFaHg 26
                         + artG    C +G rC++aHg
  Pavir.2KG571400.1.p 61 HLARTGaapSCVRGLRCRYAHG 82
                         568999999************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MADAFWVYVY KVQRCPQAGN HDWTACPYAH KGERARRRDP RSFSYLAVTC PAFRESQQQQ  60
HLARTGAAPS CVRGLRCRYA HGVFELWLHP ARFRTVMCEA GPRCPRRICF FAHFPAQLRA  120
ENDPVPLHGL PPLPPRVPRA PAAAAPLSFP RRVDLAMQAM PGKVRLYGGA AAGESSTSPA  180
PAAAAHVVPL QALPPPPPAS PDDDKAEVPA VQIHCRRASE DGDYPHFDLI KDMVL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}.
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG571400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432260.0AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801803.11e-111zinc finger CCCH domain-containing protein 10-like
SwissprotO650364e-41C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2S3H5931e-110A0A2S3H593_9POAL; Uncharacterized protein
STRINGPavir.J20047.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1118956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-42C3H family protein