PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG583500.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 482aa MW: 51023.9 Da PI: 7.3536

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG583500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Pavir.2KG583500.2.p 102 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 162 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	99	154	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MELAGAASPR SPESHVAPPR PPPQPPEKDA CEDTGDMSIT GEKPCTHQEL DFGQTNSSSL 60 NSSSERENQA PSNDEMTGSE SNLETAKTEG DVPSGEKVLK KPDKILPCPR CNSMDTKFCY 120 YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSSNCRSILI PGSSVATPVG 180 ESTLFPLPIN GNQAAVNFGP DSPLCNSMAS VLKIGGEQSK NANPASTAQP RNGETQTCPP 240 STTTSDGPRS ESHKGTVSAH QNGVVGHGNG VTSMHPIPFF PGPPFVYPWS PAWNGVPAAA 300 APVCPAPAEA VNSSENGNSS SSVQWNVPPL VSVLPPGFCG APIPVPVMPS SVWPFITPWP 360 NGAWNMPWLG PGVSASPPTS STTCSDSGSP VLGKHSRDSR PQGDEKAERC LWIPKTLRID 420 DPDEAAKSSI WTTLGIEPGE RGMFRPFRSK PENRAQISST AKVLQANPAA LSRSQSFQET 480 T*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MELAGAASPR SPESHVAPPR PPPQPPEKDA CEDTGDMSIT GEKPCTHQEL DFGQTNSSSL  60
NSSSERENQA PSNDEMTGSE SNLETAKTEG DVPSGEKVLK KPDKILPCPR CNSMDTKFCY  120
YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSSNCRSILI PGSSVATPVG  180
ESTLFPLPIN GNQAAVNFGP DSPLCNSMAS VLKIGGEQSK NANPASTAQP RNGETQTCPP  240
STTTSDGPRS ESHKGTVSAH QNGVVGHGNG VTSMHPIPFF PGPPFVYPWS PAWNGVPAAA  300
APVCPAPAEA VNSSENGNSS SSVQWNVPPL VSVLPPGFCG APIPVPVMPS SVWPFITPWP  360
NGAWNMPWLG PGVSASPPTS STTCSDSGSP VLGKHSRDSR PQGDEKAERC LWIPKTLRID  420
DPDEAAKSSI WTTLGIEPGE RGMFRPFRSK PENRAQISST AKVLQANPAA LSRSQSFQET  480
T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.13662	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG583500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800855.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2T7F085	0.0	A0A2T7F085_9POAL; Uncharacterized protein
STRING	Pavir.Bb03728.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-65	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pavir.2KG583500.2.p