PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG593700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 619aa    MW: 67135.4 Da    PI: 5.2847
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG593700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3460.11.6e-140624581354
                          XXXXXXXXXXXXXXXXXXXXXXX...XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkq.lledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                          eel++rmw+d+ +l+rlke+++q +++ ke+a    ++++ + + +rkkmsraQDgiLkYMlk+mevcnaqGfvYgiipe+gkpv+gasd
  Pavir.2KG593700.1.p  62 EELERRMWRDRLRLRRLKEQQQQqQTGGKEEAPPRPRQSQEQARRNRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPENGKPVTGASD 151
                          8*****************98876367788887777666667777789******************************************* PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
                 EIN3  90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                          +LraWWkekv+fdrngpaa++ yqa+n++++g+    + + + +hsl+elqDTtlgSLLsalmqhcdppqrrfpl+kgv+pPWWP+G e 
  Pavir.2KG593700.1.p 152 NLRAWWKEKVRFDRNGPAAVARYQADNAAPGGGAAVAA-APAGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLDKGVPPPWWPQGAEP 240
                          ********************************999965.99************************************************* PP

                          HHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.... CS
                 EIN3 180 wwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.... 265
                          ww+e+g++ + g+ppy+kphdlkkawkv+vLtavikhmsp+i+++r+l+rqsk+lqdkm+a+e   +l+vl+qee++   v++h++    
  Pavir.2KG593700.1.p 241 WWPEAGVPGELGPPPYRKPHDLKKAWKVAVLTAVIKHMSPDIDKVRRLVRQSKCLQDKMTAREIVQWLAVLKQEEDLH-LVQQHPPgalp 329
                          **************************************************************************9855.67777556777 PP

                          ..XXXXXXXXX.XXXXXXXXXXXXXXXXX.XXXXXXXXXX...................................XXXXXXXXXXXXX.X CS
                 EIN3 266 ..slrkqspkv.tlsceqkedvegkkeskikhvqavktta...................................gfpvvrkrkkkps.e 316
                            s++  +  + +  ++ ++dv+g ++ +  + ++  + a                                   ++++ +kr ++ + e
  Pavir.2KG593700.1.p 330 tlSSNAAAAVLpFSASSGEYDVDGADDGEETDGRNSMKPAcndapafvdlsssmdaiasrflmpaaalmkeetadTAELFHKRTAPAGvE 419
                          5432222222213456679999944444422222222222566789****************************9888999998776526 PP

                          XXXXXXX.......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                 EIN3 317 sakvssk.evsrtcqssqfrgsetelifadknsisqney 354
                          ++ + s+    +tc ++q+++++++++f d+ +++ ++y
  Pavir.2KG593700.1.p 420 PELMLSNsFRAYTCGNAQCPHNSSAHGFLDRGARNAHQY 458
                          66665552568**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.9E-12562315No hitNo description
Gene3DG3DSA:1.10.3180.101.9E-67193318IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-57195318IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MMGGGSLVLD QRMPADDDKA LFGECFLGEG DLVSPAPAHD DMMMSFVPDG DESDDDDVGG  60
IEELERRMWR DRLRLRRLKE QQQQQQTGGK EEAPPRPRQS QEQARRNRKK MSRAQDGILK  120
YMLKMMEVCN AQGFVYGIIP ENGKPVTGAS DNLRAWWKEK VRFDRNGPAA VARYQADNAA  180
PGGGAAVAAA PAGPHSLHEL QDTTLGSLLS ALMQHCDPPQ RRFPLDKGVP PPWWPQGAEP  240
WWPEAGVPGE LGPPPYRKPH DLKKAWKVAV LTAVIKHMSP DIDKVRRLVR QSKCLQDKMT  300
AREIVQWLAV LKQEEDLHLV QQHPPGALPT LSSNAAAAVL PFSASSGEYD VDGADDGEET  360
DGRNSMKPAC NDAPAFVDLS SSMDAIASRF LMPAAALMKE ETADTAELFH KRTAPAGVEP  420
ELMLSNSFRA YTCGNAQCPH NSSAHGFLDR GARNAHQYTC ELDFNFNTPA ADNNKQLAPP  480
PGRQAVDLEL HVDGQRSLAE LMEMYDANVG APRSLSGIDD TGAAPAGVQV SGGPFLTPWL  540
FGGATATNGV MPPPPLQQQQ SAGFYVRDDA LPPFSDIAAA SPELRFSSGL NVPGSTAHYG  600
GASQLQQQHK PAGSNWFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-651923171126Protein ETHYLENE INSENSITIVE 3
4zds_B1e-651923171126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14361e-133root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf blades, leaf sheaths, stems, internodes, anthers of young flowers, and developing grains. {ECO:0000269|PubMed:25995326}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:16786297, PubMed:28829777, PubMed:27701783, PubMed:25995326). Required for the inhibition of root growth by ethylene in etiolated seedlings (PubMed:25995326, PubMed:28829777). Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression (PubMed:28829777). Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae) (PubMed:27701783). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal infection (PubMed:27701783). May enhance disease resistance by facilitating reactive oxygen species (ROS) generation and jasmonate biosynthesis with subsequent phytoalexin accumulation during Magnaporthe oryzae infection (PubMed:27701783). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:16786297, ECO:0000269|PubMed:25995326, ECO:0000269|PubMed:27701783, ECO:0000269|PubMed:28829777, ECO:0000269|PubMed:30002253}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG593700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:27701783}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802438.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ10M410.0EIL1A_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1a
TrEMBLA0A2T7F0920.0A0A2T7F092_9POAL; Uncharacterized protein
STRINGPavir.Bb03705.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-136ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]
  3. Yang C, et al.
    Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.
    Plant J., 2017. 89(2): p. 338-353
    [PMID:27701783]
  4. Qin H, et al.
    The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
    PLoS Genet., 2017. 13(8): p. e1006955
    [PMID:28829777]
  5. Kuroha T, et al.
    Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
    Science, 2018. 361(6398): p. 181-186
    [PMID:30002253]