PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG022100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 627aa    MW: 72403.1 Da    PI: 8.7523
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG022100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.5e-23192291
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                         fYn+YA   GFs rks+ + +++++e t r++vCs +g+ree+  k + k+rr+r  tr+gC akl + +++ +g+w+v+++  eHnH lap
  Pavir.2NG022100.1.p  1 FYNTYALGKGFSARKSYVEWNSEHTELTLRRYVCSHQGYREEKYMKkEIKKRRPRDITRVGCPAKLLIALDRnTGQWYVKNFIDEHNHLLAP 92
                         9****************************************998774678999*****************999***************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-21192IPR004330FAR1 DNA binding domain
PfamPF105517.8E-31213305IPR018289MULE transposase domain
PROSITE profilePS509669.693479519IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
FYNTYALGKG FSARKSYVEW NSEHTELTLR RYVCSHQGYR EEKYMKKEIK KRRPRDITRV  60
GCPAKLLIAL DRNTGQWYVK NFIDEHNHLL APTDLGCLLR SHRKISVAQK AEIVELGVAG  120
IRKHQIFKIM EMQYGGYDKV GYTSRDLYNF CHLYKQEIIA DGDTQTVISH LKGHQNRDSE  180
FFFKYMTDGK GHVQGMFWCD TQCMLDYAAF GDVIVFDSTY KTNRYNLPLV PFVGVNHHYC  240
TVIFGCGIIF HENTESYVWL LKIFTEANAQ KHPISVITDG DLAMQRAISV VWPNSPYRLC  300
GWHIELNLVR NVHNDTLKGA FRIERKWQVF LANNKVKEDS WLYQMYEVRQ TWCDAYHVGH  360
CFLGLRSNQQ SESMNSRLQM NLDGKMTLLE MVQCYETCFT KVRRNEVDDD AKALQSAPFT  420
EPDASVLEIN AKERFTPNVF KAKVQFSVEA AKKCSLIEIL DGDDTTEYIV GRRDRDIMYY  480
VKCELTEEAN LKRIFCSCHK LQSLGTPCSH IFFVLGLRDE SKLPDCWWTM GAKRAFPTIR  540
KSTMYDYSPT LLRFRELHNL SLAAAFVASR SPKAYERTKR ANGGKMYGPV LPQAPEVDCE  600
AFRDVLDPMT VPGRGAPKKK LKSSSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1616622PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG022100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Ba03191.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-81FAR1-related sequence 5