PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG027300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 212aa    MW: 21897.7 Da    PI: 11.0834
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG027300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.15.8e-1188135148
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          e++l+r +rk++NRe+ArrsR+R++++ eeLe+ +++L a+ +aL+ +
  Pavir.2NG027300.1.p  88 EERLRRLKRKISNRESARRSRARRRQRAEELERAAAALRAQGRALAAR 135
                          789**************************************9999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-786135No hitNo description
SMARTSM003389.9E-788152IPR004827Basic-leucine zipper domain
PfamPF001709.6E-888134IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7690135IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.89E-692137No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLSLDEAMQL DFAGALPDMD VGSGFGFDFD LDLDLGFDTT TSGAGRGGFD FDHMATFDAT  60
MKCGAAASTG TGTTSPANAG IGADDDAEER LRRLKRKISN RESARRSRAR RRQRAEELER  120
AAAALRAQGR ALAARRDAAA ARALAVRLDN ARLGAEAGAL RRRLGEAQRQ AVLLLALARA  180
RLAAAARGPG AVGVVAPPQL AAGGAAGMMT S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG027300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665488.11e-18ocs element-binding factor 1-like
TrEMBLA0A1E5VU062e-41A0A1E5VU06_9POAL; Uncharacterized protein
STRINGSi032429m6e-33(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1683199