PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG042700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 257aa    MW: 27451.8 Da    PI: 10.3978
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG042700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.16.1e-28131187158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQ+++Il+RR +Ra+++++ +  +++rkpylheSRh hAlrR+RgsgGrF
  Pavir.2NG042700.1.p 131 KEPVYVNAKQFKGILRRRLARARAARDLRA-SRNRKPYLHESRHLHALRRARGSGGRF 187
                          59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.7E-31129190IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.496130190IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-26132187IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-20133155IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-20164187IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRSAAAMCFQ EHGLAFQVVA DGGRGHGGGA TAAPWWATTA QGFAAKFPIS FSSGDSDPPQ  60
DHKYHEPSAA GMAAYPELHK YHGPFDLAFG QSMVWSNNAG AGQRQSYGLY SPYGAQAMHG  120
RVLLPPAVAA KEPVYVNAKQ FKGILRRRLA RARAARDLRA SRNRKPYLHE SRHLHALRRA  180
RGSGGRFLNT RSLAAGDPAP PGGPEPTEDS ASKAATLHPV QDRQDVFHSS LTNMAGDGDG  240
RWACAAPRGC RDLLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-16133189461HAPB protein
4g92_A1e-16133189461HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12128GGRGHGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG042700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682178e-65EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750238e-65EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799912.11e-124nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2S3GW351e-123A0A2S3GW35_9POAL; Uncharacterized protein
STRINGPavir.Ba03783.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.34e-21nuclear factor Y, subunit A10