PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG058500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 780aa    MW: 87440.8 Da    PI: 6.8971
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG058500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.51.4e-15119197290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y+ e+GF +r ++s++   ++++t ++ vCs+egk+e ++ +         + rt+Cka+++++k++d+ w++ +l+ +HnH+l+
  Pavir.2NG058500.1.p 119 FCNLYSWELGFGIRWNNSTND-AEESVTVQEIVCSCEGKPELSSAA---------SVRTDCKARIQLHKSDDNGWYILELRGDHNHPLS 197
                          7899***********998887.7777**************998766.........9*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-12119197IPR004330FAR1 DNA binding domain
PfamPF105511.3E-23326418IPR018289MULE transposase domain
PROSITE profilePS509669.433609645IPR007527Zinc finger, SWIM-type
SMARTSM005750.0057620647IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MAGIPGAAAG GHAESPRRGA VAGGARAAAP GGRSGGSGGA GAEAGVTQDG GSSVDGGAQS  60
RACLGRRHRS SFPDEREPKL GRVSAYEESL KKYVDNKSNV VINPAVGMSF DSRADAFDFC  120
NLYSWELGFG IRWNNSTNDA EESVTVQEIV CSCEGKPELS SAASVRTDCK ARIQLHKSDD  180
NGWYILELRG DHNHPLSGAC SESLIWPSHN HLEPYTKGMV CHLRDSNVDL SKTRYFIYSF  240
FGAMKKVLFN KWALKSLCES ITTELELPED YVCKTLELFD GFGSLRRDDP SFQFRVELDY  300
TTSQFKTVLW TNGRSRMQYA QFGDAITFDT TYRSKLYDMP FGLFVGVNNH YQSVILGGVL  360
MRHETVESFK WVFREFVTLM GGKAPSTILT GQCNVMEVAI QEVLPYTTHR WCKVHVLSKE  420
NEFLGPICSK KSGFKDDFQK ITDSMLTVRE FESAWKHLLD KYNLHGNAFL SQIYDSRHKW  480
AKPYFKGKFC AKQTSMQRNE CANHMFKGYV PRNRSINMFV RHYNELQSYL ESKESFEESR  540
SGKRPRVMSK GVPVEEHAAK IYTRAMFEKF DEIIFQSGSY VVDEKERGKA YLARHIRSDC  600
RESWSQVEFE VTIRAEDGAV VCECGLGEHL GIPCCHAVNV MIHLGMLEIP AGNIVERWTM  660
HARDNLLAHM IELENDKAAE SSESYRQSEL FIQALEFVKS CSRSDWTFEI GLAGMVQLEQ  720
ELLELNQVKD VSGLSGQCSH PAAQGSDVQG MSAAATDDAK KQRYEAEAHD LKCKMVKRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG058500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459424.20.0protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A2T7ELG90.0A0A2T7ELG9_9POAL; Uncharacterized protein
STRINGPavir.Ba03656.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-70FAR1-related sequence 5