PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG058500.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 739aa    MW: 83184.2 Da    PI: 7.326
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG058500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.95.1e-111001562590
                 FAR1  25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++++t ++ vCs+egk+e ++ +         + rt+Cka+++++k++d+ w++ +l+ +HnH+l+
  Pavir.2NG058500.4.p 100 EESVTVQEIVCSCEGKPELSSAA---------SVRTDCKARIQLHKSDDNGWYILELRGDHNHPLS 156
                          56799999********9998766.........9*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-7101156IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23285377IPR018289MULE transposase domain
PROSITE profilePS509669.433568604IPR007527Zinc finger, SWIM-type
SMARTSM005750.0057579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MHFVGRPSPR RGAVAGGARA AAPGGRSGGS GGAGAEAGVT QDGGSSVDGG AQSRACLGRR  60
HRSSFPDERE PKLGRVSAYE ESLKKYVDNK SNVVINPAVE ESVTVQEIVC SCEGKPELSS  120
AASVRTDCKA RIQLHKSDDN GWYILELRGD HNHPLSGACS ESLIWPSHNH LEPYTKGMVC  180
HLRDSNVDLS KTRYFIYSFF GAMKKVLFNK WALKSLCESI TTELELPEDY VCKTLELFDG  240
FGSLRRDDPS FQFRVELDYT TSQFKTVLWT NGRSRMQYAQ FGDAITFDTT YRSKLYDMPF  300
GLFVGVNNHY QSVILGGVLM RHETVESFKW VFREFVTLMG GKAPSTILTG QCNVMEVAIQ  360
EVLPYTTHRW CKVHVLSKEN EFLGPICSKK SGFKDDFQKI TDSMLTVREF ESAWKHLLDK  420
YNLHGNAFLS QIYDSRHKWA KPYFKGKFCA KQTSMQRNEC ANHMFKGYVP RNRSINMFVR  480
HYNELQSYLE SKESFEESRS GKRPRVMSKG VPVEEHAAKI YTRAMFEKFD EIIFQSGSYV  540
VDEKERGKAY LARHIRSDCR ESWSQVEFEV TIRAEDGAVV CECGLGEHLG IPCCHAVNVM  600
IHLGMLEIPA GNIVERWTMH ARDNLLAHMI ELENDKAAES SESYRQSELF IQALEFVKSC  660
SRSDWTFEIG LAGMVQLEQE LLELNQVKDV SGLSGQCSHP AAQGSDVQGM SAAATDDAKK  720
QRYEAEAHDL KCKMVKRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG058500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459424.20.0protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A2T7ELG90.0A0A2T7ELG9_9POAL; Uncharacterized protein
STRINGPavir.Ba03656.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-66FAR1-related sequence 5