PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG058500.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 643aa    MW: 72644.1 Da    PI: 7.8618
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG058500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.91e-15112190290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y+ e+GF +r ++s++   ++++t ++ vCs+egk+e ++ +         + rt+Cka+++++k++d+ w++ +l+ +HnH+l+
  Pavir.2NG058500.5.p 112 FCNLYSWELGFGIRWNNSTND-AEESVTVQEIVCSCEGKPELSSAA---------SVRTDCKARIQLHKSDDNGWYILELRGDHNHPLS 190
                          7899***********998887.7777**************998766.........9*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-12112190IPR004330FAR1 DNA binding domain
PfamPF105519.9E-24319411IPR018289MULE transposase domain
PROSITE profilePS509669.198602638IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MHFVGRPSPR RGAVAGGARA AAPGGRSGGS GGAGAEAGVT QDGGSSVDGG AQSRACLGRR  60
HRSSFPDERE PKLGRVSAYE ESLKKYVDNK SNVVINPAVG MSFDSRADAF DFCNLYSWEL  120
GFGIRWNNST NDAEESVTVQ EIVCSCEGKP ELSSAASVRT DCKARIQLHK SDDNGWYILE  180
LRGDHNHPLS GACSESLIWP SHNHLEPYTK GMVCHLRDSN VDLSKTRYFI YSFFGAMKKV  240
LFNKWALKSL CESITTELEL PEDYVCKTLE LFDGFGSLRR DDPSFQFRVE LDYTTSQFKT  300
VLWTNGRSRM QYAQFGDAIT FDTTYRSKLY DMPFGLFVGV NNHYQSVILG GVLMRHETVE  360
SFKWVFREFV TLMGGKAPST ILTGQCNVME VAIQEVLPYT THRWCKVHVL SKENEFLGPI  420
CSKKSGFKDD FQKITDSMLT VREFESAWKH LLDKYNLHGN AFLSQIYDSR HKWAKPYFKG  480
KFCAKQTSMQ RNECANHMFK GYVPRNRSIN MFVRHYNELQ SYLESKESFE ESRSGKRPRV  540
MSKGVPVEEH AAKIYTRAMF EKFDEIIFQS GSYVVDEKER GKAYLARHIR SDCRESWSQV  600
EFEVTIRAED GAVVCECGLG EHLGIPCCHA VNVRFTLSEI VT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG058500.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459424.20.0protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A2T7ELG90.0A0A2T7ELG9_9POAL; Uncharacterized protein
STRINGPavir.Ba03656.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-63FAR1-related sequence 5