PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG077300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 224aa    MW: 23406.5 Da    PI: 8.3057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG077300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-133480354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r+h+e+Er+RR+riN  +++Lr+l+P a      +++Ka+ L ++v+++++L
  Pavir.2NG077300.1.p 34 RSHSEAERKRRQRINAHLATLRTLVPAA-----SRMDKAALLGEVVRHVREL 80
                         68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6053180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-143483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-113480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-133486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-113481No hitNo description
SMARTSM003533.3E-123786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.6E-5133182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVPVGSEEAE VAMDGECSPP PPPAAAAPRS GPSRSHSEAE RKRRQRINAH LATLRTLVPA  60
ASRMDKAALL GEVVRHVREL RGEADAAAAG AAVAVPGEGD EVGVEEGQHC CCRGAGGEGD  120
RAAAATRRVR AWVCCADRPG LMSELGRAVR SVSARAVRAE IATVGGRTRS VLELDVGGQH  180
DGEGTPSRLA LQTALRAVLL SREELVAAEC YKRQRFSAHL ARV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG077300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9691021e-179EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799424.11e-119transcription factor bHLH30-like
TrEMBLA0A1E5W6B91e-123A0A1E5W6B9_9POAL; Uncharacterized protein
STRINGSi033077m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.17e-12bHLH family protein