PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG085000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 309aa    MW: 32985.9 Da    PI: 8.0446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG085000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-184493255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Pavir.2NG085000.1.p 44 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 93
                         799******.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-134493IPR001471AP2/ERF domain
CDDcd000182.54E-3144102No hitNo description
PROSITE profilePS5103219.83644101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-2844101IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1944101IPR016177DNA-binding domain
SMARTSM003802.0E-3544107IPR001471AP2/ERF domain
PRINTSPR003671.1E-74556IPR001471AP2/ERF domain
PRINTSPR003671.1E-76783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELQFQQQPQ SHPQQQCSYQ LPVTKETKPS PKVRSKCGGG GGGKFVGVRQ RPSGRWVAEI  60
KDTTQKIRMW LGTFETAEEA ARAYDEAACL LRGANTRTNF AAGAHASSPD SPLAARIRGI  120
LNHKKLKKNA SPPTVNFFPA AYHRAGAIGT AAAASSTSTS TITTTTSSIS PSSSPSSSIS  180
FSMSSNGVRT PILPAQSIAE EVFRSYMISG SEELQLSSQQ YEQSWALNTS LPSSDGCAMA  240
DNNACSAVAD AELGKIKLEK ELLDTGRVPN GGMDRVQDKE LFDTGNDPSD SLWDLPPICP  300
LSCRSLMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14431001371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG085000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699021.11e-147ethylene-responsive transcription factor RAP2-11
TrEMBLA0A2S3GWS01e-169A0A2S3GWS0_9POAL; Uncharacterized protein
TrEMBLA0A2T7EM201e-169A0A2T7EM20_9POAL; Uncharacterized protein
STRINGPavir.Bb00676.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-25related to AP2 11