PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG100300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 218aa    MW: 23568.2 Da    PI: 7.1985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG100300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1956105255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++ V++++ +g+W+AeIr p     +  kr++lg+f+taeeAa+a++ a+++l+g
  Pavir.2NG100300.1.p  56 RFRCVHRRP-WGKWAAEIRGP-----NlhKRVWLGTFDTAEEAAAAYDSAALRLRG 105
                          699******.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-2856113IPR001471AP2/ERF domain
CDDcd000187.42E-1956113No hitNo description
PfamPF008471.6E-1356105IPR001471AP2/ERF domain
PROSITE profilePS5103222.82756113IPR001471AP2/ERF domain
SMARTSM003804.9E-3356119IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2057113IPR016177DNA-binding domain
PRINTSPR003673.4E-95768IPR001471AP2/ERF domain
PRINTSPR003673.4E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMDATRFLDA DHHHHKHTGL GKMNTTVARD HHPTMDKQRT PSGEGLPHGT GTGHRRFRCV  60
HRRPWGKWAA EIRGPNLHKR VWLGTFDTAE EAAAAYDSAA LRLRGRRAVT NFPPPSCISV  120
SATSSAVMSE TSTSSAPPSD RPVMTSQGRP ESPMASPPSP QSSVGDDATG SLWFHREPLE  180
FIDFSLPATA PAGSRHCDFG DLGDLDDLFS TPDLLAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2149113772Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG100300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874690.11e-26pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1E5V4C05e-38A0A1E5V4C0_9POAL; Uncharacterized protein
STRINGPavir.Ba03296.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-17cytokinin response factor 1