PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG109600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 149aa    MW: 16799.1 Da    PI: 10.0652
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG109600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.9e-182256135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++C+tt T+lWR gp g k+LCnaCGl+yr+kgl
  Pavir.2NG109600.1.p 22 CTQCHTTVTSLWRDGPFGRKSLCNACGLRYRRKGL 56
                         ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.42E-131456No hitNo description
PROSITE profilePS5011413.4681672IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-141668IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-152056IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.13E-122155No hitNo description
PfamPF003208.6E-162256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAADPSCQKV VRSLDRNKSK ICTQCHTTVT SLWRDGPFGR KSLCNACGLR YRRKGLEAQE  60
LEREEDKGQN KRRINRVQHS RKVTEFYKNG DNRKKNSKNK DPREVGVSTM LTTIDCGNEV  120
MLKQIEQHGE EAVRGAIILM DFSGAALS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG109600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18253810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-13GATA transcription factor 15