PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG111800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 95aa    MW: 10949.8 Da    PI: 10.4249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG111800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-163973135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++C+tt T+lW +gp g k+LCnaCGl+yr+kgl
  Pavir.2NG111800.1.p 39 CTQCHTTVTSLWLNGPFGRKSLCNACGLRYRRKGL 73
                         ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.52E-123173No hitNo description
SMARTSM004012.6E-123385IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.3473390IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-133773IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.82E-103872No hitNo description
PfamPF003208.0E-153973IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MCTKEKAVVS AILYSYSWQP IPLCQKVVRS LERNKSKICT QCHTTVTSLW LNGPFGRKSL  60
CNACGLRYRR KGLEAQELER EEDKGKNKRR INRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG111800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646409.19e-19GATA transcription factor 15
TrEMBLA2YJW22e-17A2YJW2_ORYSI; Uncharacterized protein
STRINGPavir.Ba03329.1.p6e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18253810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-11GATA transcription factor 16