PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG167700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 543aa    MW: 58268.4 Da    PI: 6.2335
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG167700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.8e-11141189155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+ ++++gr++A+++d      +   + g ++ +e+Aa+a++ a++k++g
  Pavir.2NG167700.2.p 141 SIYRGVTKHRWTGRYEAHLWD------NSCRREGGYDKEEKAARAYDLAALKYWG 189
                          57*******************......6788899*******************98 PP
2AP247.15.8e-15232283155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pavir.2NG167700.2.p 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 283
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.51E-18141199No hitNo description
SuperFamilySSF541719.81E-15141199IPR016177DNA-binding domain
PfamPF008472.3E-7141189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11142199IPR001471AP2/ERF domain
SMARTSM003801.2E-23142203IPR001471AP2/ERF domain
PROSITE profilePS5103215.593142197IPR001471AP2/ERF domain
PRINTSPR003672.5E-6143154IPR001471AP2/ERF domain
CDDcd000181.67E-23232293No hitNo description
PfamPF008477.1E-10232283IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18232293IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-18233292IPR001471AP2/ERF domain
SMARTSM003801.5E-33233297IPR001471AP2/ERF domain
PROSITE profilePS5103219.045233291IPR001471AP2/ERF domain
PRINTSPR003672.5E-6273293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGSTNNWLGF ASFSGAAAAD DILPPLPPPR GDEAAAEPKL EDFLGLQEPA AGVAGRAPFA  60
GSGGGASSIG LSMIKNWLRS QPAPGPAGAD SMALAVVEEA STDEVRKVTD DRGAESVAAV  120
VDAAQQRKAV AAVDTFGQRT SIYRGVTKHR WTGRYEAHLW DNSCRREGGY DKEEKAARAY  180
DLAALKYWGT TTTTNFPMSN YEKELEEMKH MSRQEYVASL RRKSSGFSRG ASIYRGVTRH  240
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI  300
MESSALPVGG TTKCLKDVHD QSDMGMNSSG ADSASHMTAT TKLLTDGIGS YGNENYGYSG  360
WSPSAMMRIP LQFSNGQEHS RLWCKPEQDS AVVAAAHNLQ HLQHFPSPGG THDFFHPSHV  420
QDVTGVADVS SPSVDPNSFL YNGVVGYHGS MGGGYAMPVA TLVDSNHATS SYGVEEGTSE  480
LYSGQNLYYL SQASPGANTG KADAYEQQGV GYESWVPSVP VISQKDPNVT VCHGTPLFSV  540
WK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.58750.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG167700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-120BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2T7CM500.0A0A2T7CM50_9POAL; Uncharacterized protein
STRINGPavir.Hb01059.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-112AP2 family protein