PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG180200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 332aa    MW: 34917.8 Da    PI: 6.5728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.6e-27126186158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp +v+++Y+g+H++
  Pavir.2NG180200.1.p 126 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCLATKQVQRTDEDPALVDVIYHGDHTC 186
                          59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.435121184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-27123187IPR003657WRKY domain
SuperFamilySSF1182901.16E-24124186IPR003657WRKY domain
SMARTSM007741.5E-39126188IPR003657WRKY domain
PfamPF031066.4E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MESADGSNGA GGGGLVVTEL SHIKELVRQL EVHLGGGSSH ELCRHLTTQI FSITERSIGI  60
MTASSGLDAA GARKRAAGLA SPLPATPTSD VADGPFRSTK KRKVMEKRKH QVRVSSPGGG  120
AGENPVDDGH SWRKYGQKEI LGAKHPRGYY RCTHRHSQGC LATKQVQRTD EDPALVDVIY  180
HGDHTCVQRP AAAGQGQPPE HNPDASSFLQ SLTAGLSVKT EGLPALAADP QGWSATAPFY  240
FSSSTPASVR PATAERSPFS APSTSENWGV SPATSDSNHV APYLPFEDAE WRGRNELQEV  300
VSALVAASAP PAPAVDGLDE LLDIDIASFF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-23126186868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG180200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586250.0KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.10.0probable WRKY transcription factor 30
TrEMBLA0A2S3GYW50.0A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-34WRKY family protein