PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG180300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 316aa    MW: 32874.4 Da    PI: 6.5026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG180300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.82e-27119178258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y g H++
  Pavir.2NG180300.1.p 119 DDGHSWRKYGQKEILGAKNPRGYYRCTHRhtqGCAATKQVQRADEDPALFDVVYIGAHTC 178
                          8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-27112179IPR003657WRKY domain
SuperFamilySSF1182902.09E-24117178IPR003657WRKY domain
SMARTSM007742.7E-40118180IPR003657WRKY domain
PROSITE profilePS5081121.425119176IPR003657WRKY domain
PfamPF031061.4E-26119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESVVVDGNG GCGGRVVVEL SHIKDLVRQL EGHLGGSQTQ ERCRLLASQI SSLTERSIGV  60
ITSYCSLDGG GRKRPAADAA ARSPLSDASD APTKKRRRTE KVKHQVRVSS AAGGDVPADD  120
GHSWRKYGQK EILGAKNPRG YYRCTHRHTQ GCAATKQVQR ADEDPALFDV VYIGAHTCVQ  180
SGAAAAAVAA AQAPEQGAHT LLQSLSASLT VKTEGLAAAP EEAPQGWAAT APCCPSPTAP  240
SGRCPAPERS PFSAPSTSEN WGASPATSDS NQHAASFPPF ELVAGDVQFE FGEVVSALVG  300
VPGEFHDDFD ISSFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22119178968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.157430.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG180300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800892.11e-156probable WRKY transcription factor 30
TrEMBLA0A3L6TEL51e-177A0A3L6TEL5_PANMI; Putative WRKY transcription factor 30
STRINGPavir.Ba02544.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-35WRKY family protein