PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG180300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 315aa    MW: 32718.3 Da    PI: 6.3414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG180300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.82e-27118177258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y g H++
  Pavir.2NG180300.2.p 118 DDGHSWRKYGQKEILGAKNPRGYYRCTHRhtqGCAATKQVQRADEDPALFDVVYIGAHTC 177
                          8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-27111178IPR003657WRKY domain
SuperFamilySSF1182902.09E-24116177IPR003657WRKY domain
SMARTSM007742.7E-40117179IPR003657WRKY domain
PfamPF031061.4E-26118177IPR003657WRKY domain
PROSITE profilePS5081121.425118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESVVVDGNG GCGGRVVVEL SHIKDLVRQL EGHLGGSQTQ ERCRLLASQI SSLTERSIGV  60
ITSYCSLDGG GRKRPAADAA ARSPLSDASD APTKKRRTEK VKHQVRVSSA AGGDVPADDG  120
HSWRKYGQKE ILGAKNPRGY YRCTHRHTQG CAATKQVQRA DEDPALFDVV YIGAHTCVQS  180
GAAAAAVAAA QAPEQGAHTL LQSLSASLTV KTEGLAAAPE EAPQGWAATA PCCPSPTAPS  240
GRCPAPERSP FSAPSTSENW GASPATSDSN QHAASFPPFE LVAGDVQFEF GEVVSALVGV  300
PGEFHDDFDI SSFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-23118177968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.157430.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG180300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800892.11e-155probable WRKY transcription factor 30
TrEMBLA0A3L6TEL51e-176A0A3L6TEL5_PANMI; Putative WRKY transcription factor 30
STRINGPavir.Ba02544.1.p1e-165(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-34WRKY DNA-binding protein 30