PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG183000.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 272aa MW: 29436.1 Da PI: 7.5081

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG183000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	1e-15	206	249	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Pavir.2NG183000.3.p 206 RRQKRMIKNRESAARSRARKQAYTNELENKVSHLEEENERLKKQ 249 69***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-15	201	249	No hit	No description
SMART	SM00338	6.9E-12	202	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.622	204	249	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.56E-12	206	251	No hit	No description
Pfam	PF00170	2.1E-13	206	249	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.67E-27	206	251	No hit	No description
PROSITE pattern	PS00036	0	209	224	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MNFDELLKSV LPDGVDPNGT VTGKPDTASS LQRQGSIMMP PQLSKKTVDE VWKGIQDGPG 60 TSATDGGRHR RERQPTLGEM TLEEFLVKAG VVSEGLMKDS DDLPSNMNTF GSNVVAGGGS 120 GLNSGAQWLQ QYQQQALESR QPSLVGSYMA SQLSPQPLSV ATGAMLDSIY SDGQITSPTV 180 GAFSDPQTPG RKRGALGEVV DKVIERRQKR MIKNRESAAR SRARKQAYTN ELENKVSHLE 240 EENERLKKQK HNEIVMLLFC CGDASNLGSV K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20340	0.0	callus\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG183000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808690.1	1e-160	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	2e-57	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A3L6T0M4	1e-160	A0A3L6T0M4_PANMI; ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
STRING	Pavir.J34085.1.p	1e-170	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-57	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Pavir.2NG183000.3.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]