PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG186100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 485aa    MW: 50896.6 Da    PI: 6.4292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG186100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.92.4e-841054752374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          + lL+ecA avs g+l+ a+ +L +l ++asp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p  ++      + aa+++f++vsP+
  Pavir.2NG186100.1.p 105 IALLMECAVAVSVGNLADANGMLLELAQMASPYAsSCGERLVAYFTKAMAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSPL 188
                          689*******************************66779**********************888776665......678899******** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +f++l++NqaIlea+++++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp lR+Tg+g     s+ +l+ tg++La +A++l +pfef
  Pavir.2NG186100.1.p 189 ARFAYLACNQAILEAFHSKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPLLRVTGFGM----SASALHDTGNQLAGLASKLSIPFEF 274
                          *****************************988447**************************....9************************ PP

                 GRAS 179 nvlvakrledl.eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe............adhnsesFl 254
                           ++ akr  d+  + +   ++ gEalaV++    h ++d  ++       +++lv+ l+Pk++++veqe            a h+++ Fl
  Pavir.2NG186100.1.p 275 YAV-AKRPGDVdAVAAVPSRRpGEALAVHWLR--HAMYDAAGDDGA----TMRLVRWLEPKMLTLVEQErggapgdgggggAGHEHGHFL 357
                          **5.665555515667755556********99..778755565555....*******************877666666555566666*** PP

                 GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                           rf++al++ysalfdsl a+ p+++   r+ vE+ +lgrei nv+a  g +r  r + l+ W++ l + GF  +    +a+  a +  + 
  Pavir.2NG186100.1.p 358 GRFVSALHHYSALFDSLGASRPADEdASRHLVEHGVLGREIGNVLAVGGPSRSGRDK-LGCWQAELARHGFLRAGGAGRAQLVAGACPAG 446
                          *****************88888877699***********************999987.*************9988877776666555555 PP

                 GRAS 344 vksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                              g +v ++ +g++ lgWk+ pL++vS W+
  Pavir.2NG186100.1.p 447 ---LGSTVADDhDGTVRLGWKGTPLYAVSTWT 475
                          ...55778766156666**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.56978457IPR005202Transcription factor GRAS
PfamPF035148.4E-82105475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MQDSLSLMQF HDPYLYSGSA VSANLPLSSS HSFLPHRQDF VHTGDRCSGK DVPEFVDQAA  60
AEVSGEQELA VSKEVHEGGG DAAVEEQDGA ATARGEEEAH GVRMIALLME CAVAVSVGNL  120
ADANGMLLEL AQMASPYASS CGERLVAYFT KAMAARLMSS WVGICAPLAP PCAAVHAAFR  180
AFYNVSPLAR FAYLACNQAI LEAFHSKRLV HIVDLDVVPG GALQWLSLLP ALAARPGGPP  240
LLRVTGFGMS ASALHDTGNQ LAGLASKLSI PFEFYAVAKR PGDVDAVAAV PSRRPGEALA  300
VHWLRHAMYD AAGDDGATMR LVRWLEPKML TLVEQERGGA PGDGGGGGAG HEHGHFLGRF  360
VSALHHYSAL FDSLGASRPA DEDASRHLVE HGVLGREIGN VLAVGGPSRS GRDKLGCWQA  420
ELARHGFLRA GGAGRAQLVA GACPAGLGST VADDHDGTVR LGWKGTPLYA VSTWTWCPSP  480
HAQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-100944759379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG186100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269620.0KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806715.10.0protein SCARECROW-like
TrEMBLA0A3L6SYB40.0A0A3L6SYB4_PANMI; Protein scarecrow-like
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-83GRAS family protein