PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG196500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 160aa    MW: 17881 Da    PI: 9.675
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG196500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.2e-142975349
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                         e++r rrk +NRe+ArrsR+RK++ ++ L+  vk+L+ +Nk+L   l
  Pavir.2NG196500.1.p 29 ERRRKRRKDSNRESARRSRLRKQQHLDDLTSQVKQLKDQNKQLSLAL 75
                         789***************************************98544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.7E-112375No hitNo description
SMARTSM003389.6E-132791IPR004827Basic-leucine zipper domain
PfamPF001701.4E-112974IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8642992IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-113181No hitNo description
CDDcd147021.19E-153280No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSSGTSSRSS LGTRSSRSED DLDLQTQMER RRKRRKDSNR ESARRSRLRK QQHLDDLTSQ  60
VKQLKDQNKQ LSLALSITSQ NLVAVQAQNS VLQTQKMELD SRLSALTEIL CYMNAITCTN  120
ASAPANPAMV NNITSSSSYD LLGASCTWNQ QPIDMYQCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935RRRKRRK
22936RRRKRRKD
33136RKRRKD
44349RRSRLRK
54350RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.102101e-117callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG196500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670533e-91BT067053.1 Zea mays full-length cDNA clone ZM_BFb0173J02 mRNA, complete cds.
GenBankKJ7275583e-91KJ727558.1 Zea mays clone pUT5418 bZIP transcription factor (bZIP9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802226.12e-90bZIP transcription factor 44-like
TrEMBLA0A2S3GYW75e-89A0A2S3GYW7_9POAL; Uncharacterized protein
STRINGPavir.Ba02250.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-24basic leucine-zipper 44