PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG201900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 314aa    MW: 33308 Da    PI: 8.9908
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.66.8e-24205267163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N +L++el++lkk ++ +++e+
  Pavir.2NG201900.1.p 205 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 267
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-17201265No hitNo description
SMARTSM003385.3E-21205269IPR004827Basic-leucine zipper domain
PfamPF001701.0E-21205267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587207270IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10208263No hitNo description
CDDcd147024.06E-19210260No hitNo description
PROSITE patternPS000360212227IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQAYYAAGGQ PYAWHAAQQH MLAAAAAAAG APYGTPMPFH VSFHPAYYAH AAMATSVPYT  60
AGEALAVAEG KSKRKSSGAP SVGSASGSSN GGSEEASEKR DASAGHKLLP SAKRRKSTGA  120
NGQGEPSQAA IMQDVAAEAR SAAKRPGKLS VSTTEMAAIS NARPNLNIGI DLWSNSPVKA  180
ETSGPIQINA AAPSHDVPLS HMQDERELKR ERRKQSNRES ARRSRLRKQQ ECEELAQKVT  240
DLTAINGTLR SELDQLKKAC EDMEAENSQL MGEMEQAEAP SVVTTLSMHI DTAKVHHGKS  300
DQHRDKNNND SKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227RRSRLRK
2221228RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.354621e-165callus
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG201900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317833.11e-160DNA-binding protein EMBP-1 isoform X2
SwissprotP250324e-59EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A3L6TLH81e-175A0A3L6TLH8_PANMI; Uncharacterized protein
STRINGPavir.J09275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-27basic region/leucine zipper transcription factor 68