PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG219900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 419aa    MW: 44097.8 Da    PI: 5.8324
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG219900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-151152344
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         i n + r  tf kR++g+ KKAeELSvLC+++va+++++ +g
  Pavir.2NG219900.1.p 11 IPNRRVRADTFGKRKKGLKKKAEELSVLCGVDVALVVAAGDG 52
                         668888999****************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.754152IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-18179IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-16160IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRRKVSMGL IPNRRVRADT FGKRKKGLKK KAEELSVLCG VDVALVVAAG DGGAAAAADV  60
WESREGVLAR YRALGAEARA RHTHRAYLQA GLGKWEAKLA RVRQGGPDAL ARWDKALDGV  120
ATEEDARWLL DAVDAAIRAA EDRLRALGLP PVDDDEDGVV LDGVAPLNFA AAAGDHYGLL  180
HDAVGGSGDA NNGQQAMWGT NGFHFPQGGA ADAQHTGYGF QTYTSGGGAG VEEGYHLQMA  240
PDMYSSRDHN NGHLANAYQQ HGYGFQCADA SYSGVPSGYA QPSVPMWWSA DEPRHAMLPL  300
EYPAADAGLN YADTPAAQGV GGSSFAMGAA GGNFVHSQPA LSLAMNTMGG SGDNFTNAMP  360
AQPLAMSYGG ELTVAGRYAA QWQAPPHPQR AGGDQRPTIE QLHYLSDLED TQLHLYGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG219900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.10.0developmental protein SEPALLATA 3-like
TrEMBLA0A3L6SLH90.0A0A3L6SLH9_PANMI; Uncharacterized protein
STRINGPavir.J26173.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960